Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00459 ATGGATTTGTCAGAAAATTCTCTCTGTGGTACTATCCCTGAAACAATAGGTAACATGAGCAATTTAAGTCAACTTTACATTTCTAACAACTCCCGCCTACATGGGCCAATCCCATCGTCCTTATGGAACATGTCCAAGTTGACAGTGCTCAACCTTTATGGCAATAACCATTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGGAAATTTAGATCAACTTGGACTTGATCAAAACCAACTTTCCGGTCCCATTCCTTCCACAGTTGGAAAGTTGACCAAGCTTACCTATTTGTTTTTAAGCTTCAACAATTTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAAACGCTTGGTCTCGAAAGCAACAACCTCTCAGGAACAATTCCTGCCACAATTCAAAATTTGAAAAGGCTCACCTACTTAGCATTGGCCGACAACAAACTTAATGGCAGTATTTCACAAGTCTTGAATAACAATAATAAATGGCTTTCCGTGTTACTTGATGGGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTCCCTAGATGCCCTTATTGCTTTCAACAACCGTTTCACCGGTCCAGTGCCGGTAAGCTTGAAGAACTGTGCTAGTGTTACTAGACTCCGATTGGAAGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGAACTACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCATCAAACTGGGGTAAGTGTCCTAATCTTGATACCCTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTCGCAGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGAAAGATTCCAAAGGAATTAGGCAACATGAAATCTTTAATTGAACTCAAGATTAGCAACAACGATCTTTCTGGAGACATTCCCAAGGAAATTGGATCACTGCAAATTCTCGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGAAAAATACCAGCAGAAGTTGTAGAGTTGCCTAAGTTACGGAATTTAACTTTGAGCAATAATAAAATAAACGGAAATATTCCCTTGGAGTTTCGCCAACTTCAGCCTCTTGAATACCTTGATCTTAGTGGGAATTTGTTGACTGGAACAATACCAAGGCAACTTGGAGCGGTGATCAAACTGAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCATCCAGTTTTGAGGGCATCTCAAATTTGATTTCTGTCAACATATCATACAATCGGTTAGAAGGACCACTTCCCAAAAATGGAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACGTCACTGGGTTGATGCTTTGCCCAGCCAACCGCAATGAAAGGAAGCACAAGGACATTCTTCTGATATTACTTCTCATATTGGGTGCTCTTGCATTAATATTGTGTGCGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAGAAGCCCAAGGAAAAGAAGTATCAGAAAATGCATTGTCTCAAGAAGTGTTTTCCGTTTGGAGTCGTGATGGAAAAATTATGTTTGAAACTATCATTGAAGCTACCCACAATTTTAATGACGAATATCTCATAGGTGTGGGAGGACAAGGAAATGTTTACAGAGCTGAGTTCCCTTCAGGTGAGGTCTATGCGGTGAAGAAACTTCATCTAGGAACAGATGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTATGCGGGTTTTGCTCACATCCACGATTCACATTTTTGGTTTATAAGTTCATGGAAGGGGGTAGCTTGGATCAAACCCTAAGCAATGAGAAAAAAGCATCTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTTGATTCACAGTACGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGCTCTTGGACGACGTTTCAAGGCACATTAGGGTATGCAGCTCCAGAGTTTGCCCAAACTATGGAAGTAACTGAGAAATGTGATGTATTCAGTTTTGGTGTGCTTTGCCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCGTTTCTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTGCTACTACTGGATGTGCTAGACCAAAGGCCTCCTCATCCTCTTAAATCAGTTGTCGGGGATGTCATTTTGGTTTCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCAAGTTCTCGCCCAACAATGGCTGAAGTGTCCAAAATGTTAATGATGGGGAAATCCTCGTTACCAGCTCAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 2541 0.4038 MDLSENSLCGTIPETIGNMSNLSQLYISNNSRLHGPIPSSLWNMSKLTVLNLYGNNHSGSIPASIENLGNLDQLGLDQNQLSGPIPSTVGKLTKLTYLFLSFNNFSGSIPPSIGNLINLETLGLESNNLSGTIPATIQNLKRLTYLALADNKLNGSISQVLNNNNKWLSVLLDGNDFTGHLPPQICSAGSLDALIAFNNRFTGPVPVSLKNCASVTRLRLEGNQLEGDISQDFGVYPNLNYIDLSDNKFYGQISSNWGKCPNLDTLKISNNNISGGIPVELAEATKLGKLHLSSNHLKGKIPKELGNMKSLIELKISNNDLSGDIPKEIGSLQILEELDLGDNQLSGKIPAEVVELPKLRNLTLSNNKINGNIPLEFRQLQPLEYLDLSGNLLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFEGISNLISVNISYNRLEGPLPKNGAFLNASIESLKNNTGLCGNVTGLMLCPANRNERKHKDILLILLLILGALALILCAVGVSMYILCRKARKKEAQGKEVSENALSQEVFSVWSRDGKIMFETIIEATHNFNDEYLIGVGGQGNVYRAEFPSGEVYAVKKLHLGTDGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQTLSNEKKASAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEARVTDFGTAKILKPGCSWTTFQGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLVSSLLSSSSAAITHNLLLLDVLDQRPPHPLKSVVGDVILVSSLAFSCLSENPSSRPTMAEVSKMLMMGKSSLPAQLPMIRLGQLL 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00459 846 SUPERFAMILY L domain-like 195 467 - -
Vian2g00459 846 Gene3D Transferase(Phosphotransferase) domain 1 636 835 - -
Vian2g00459 846 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vian2g00459 846 Pfam Leucine rich repeat 383 441 IPR001611 GO:0005515
Vian2g00459 846 Pfam Leucine rich repeat 310 369 IPR001611 GO:0005515
Vian2g00459 846 Pfam Leucine rich repeat 237 297 IPR001611 GO:0005515
Vian2g00459 846 SUPERFAMILY Protein kinase-like (PK-like) 544 827 IPR011009 -
Vian2g00459 846 Gene3D Ribonuclease Inhibitor 170 252 IPR032675 -
Vian2g00459 846 FunFam MDIS1-interacting receptor like kinase 2 636 832 - -
Vian2g00459 846 Gene3D Phosphorylase Kinase; domain 1 516 635 - -
Vian2g00459 846 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 167 - -
Vian2g00459 846 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 168 479 - -
Vian2g00459 846 FunFam Leucine-rich repeat receptor protein kinase MSP1 518 635 - -
Vian2g00459 846 ProSitePatterns Tyrosine protein kinases specific active-site signature. 681 693 IPR008266 GO:0004672|GO:0006468
Vian2g00459 846 PANTHER LEUCINE RICH REPEAT KINASE 2 113 832 - -
Vian2g00459 846 Gene3D Ribonuclease Inhibitor 253 349 IPR032675 -
Vian2g00459 846 Gene3D Ribonuclease Inhibitor 350 473 IPR032675 -
Vian2g00459 846 SUPERFAMILY L domain-like 2 226 - -
Vian2g00459 846 Gene3D Ribonuclease Inhibitor 1 169 IPR032675 -
Vian2g00459 846 Pfam Leucine Rich Repeat 46 68 IPR001611 GO:0005515
Vian2g00459 846 Pfam Protein kinase domain 559 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00459 846 ProSiteProfiles Protein kinase domain profile. 557 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00459 846 SMART LRR_typ_2 308 332 IPR003591 -
Vian2g00459 846 SMART LRR_typ_2 140 163 IPR003591 -
Vian2g00459 846 SMART LRR_typ_2 380 404 IPR003591 -
Vian2g00459 846 SMART LRR_typ_2 356 379 IPR003591 -
Vian2g00459 846 SMART LRR_typ_2 92 116 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00459 Vian-Chr2 5436716 5439514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00459 6 728 Receptor kinase-like Gene Family AT4G08850 46.112 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00459 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00459 - - vra:106759489 1288.48