Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00445 ATGACTTCAGCCACCGCAGATTCCGACTTTGAGTTCTTGGAATCCGTTCGACAATACCTACTGGGACACGATTCCATCAATCTCATGCCTGCAACCCACCAAGTTGCTTCTCATGATCCACTTTCAAACCCTAAACGTGATGGTGATTTGGAGAACATTGTTTTCCGCAGTGAGGATGCAACTGCTGTGGTGGCGCGTCATGTCCACGCCCCACAGGCGTGGAAGCATTTCCGAGGCGTGAGGCGCAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAACTAGGGTTTGGCTTGGAACTTTTGACACTGAGGAGAAAGCAGCTCTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGGCAAAAAGCTAAGCTGAATTTTCCTCATCTTATAGATTCTGATAATTTTGAAACATTGTCGGAACCGGTGATGGAAACAACTTGTAAGAGGAAGTTGTCGCAAAGTTTTGAACCATCTTCACCGTCATCCTCGTGTTCAGAAGATAGCTCAGAGTCACAAGGGACGAAGAGGAGGAAGAACCTCACTCATCTATTGAATAAGTTAGCCAAGAACAGAAGCCAAGCCAAGCTGGCATGTTGA 618 0.4806 MTSATADSDFEFLESVRQYLLGHDSINLMPATHQVASHDPLSNPKRDGDLENIVFRSEDATAVVARHVHAPQAWKHFRGVRRRPWGKFAAEIRDPKKNGTRVWLGTFDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNFETLSEPVMETTCKRKLSQSFEPSSPSSSCSEDSSESQGTKRRKNLTHLLNKLAKNRSQAKLAC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00445 205 FunFam Ethylene-responsive transcription factor 2 75 135 - -
Vian2g00445 205 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Vian2g00445 205 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Vian2g00445 205 MobiDBLite consensus disorder prediction 158 186 - -
Vian2g00445 205 PANTHER DNA-BINDING DOMAIN 65 182 IPR044808 GO:0003700|GO:0009873
Vian2g00445 205 MobiDBLite consensus disorder prediction 158 176 - -
Vian2g00445 205 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00445 Vian-Chr2 5139568 5140185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00445 62 145 AP2-EREBP Transcription Factor Family AT2G44840 68.235 3.91e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian2g00445 AP2 5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00445 K09286 - gmx:548037 310.842