Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00431 ATGGCTGAAAAAGATGATGGGGTTGGGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACAGTCTTTCAAGGTGAATCACATGCACCACCCTCAACAACAACAACAACTGCAGCATCAACCCCGACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGGAGTCGACGTGAAATCGACGGTGGAATGTGAGGAAGATAACGGCATTTCGTCACCGAACAGCGCCGTGTCAAGCGTCAGCGGCGGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCGTTGGTGGCCTCTGGAGAGAGGACGTCGTGCTCGCGGGGGAGCGATGACGATGATGGTGGCGGCGGAGACTGCGAAGGCGGGAGGAAGAAACTGAGGCTCACCAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACACTGAATCCGAAACGAAAACAAGCCTTGGCAGAGGAGTTGAATCTGAAACCAAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATGTTGTGAGAATTTAACTGAAGACAATAGAAGGTTGCAGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCCTCTTGTGAGCGTGGCCACTCGTCTTCAACGTCTTCTCCTGCCACCGTCCACCCGGTGGTGCCGCCGACTTCTCGCAAACTGTTTGGGGCAAACATCCGGCGGCCGGTGGCCGTCAACACTTGGCCGTTTGATGGCTCAATTCCTCGACCATAA 888 0.5113 MAEKDDGVGLSLSLSLGVNQQSFKVNHMHHPQQQQQLQHQPRPVPINHNKTLFADLFQLPDRSSDVIRGVDVKSTVECEEDNGISSPNSAVSSVSGGKRSERDDDNAALVASGERTSCSRGSDDDDGGGGDCEGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERGHSSSTSSPATVHPVVPPTSRKLFGANIRRPVAVNTWPFDGSIPRP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00431 295 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Vian2g00431 295 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Vian2g00431 295 FunFam Homeobox-leucine zipper protein 18 120 197 - -
Vian2g00431 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 259 - -
Vian2g00431 295 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Vian2g00431 295 MobiDBLite consensus disorder prediction 118 139 - -
Vian2g00431 295 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Vian2g00431 295 Coils Coil 198 225 - -
Vian2g00431 295 Gene3D - 140 190 - -
Vian2g00431 295 SUPERFAMILY Homeodomain-like 118 193 IPR009057 -
Vian2g00431 295 MobiDBLite consensus disorder prediction 79 96 - -
Vian2g00431 295 SMART HOX_1 134 196 IPR001356 GO:0003677
Vian2g00431 295 CDD homeodomain 136 193 IPR001356 GO:0003677
Vian2g00431 295 MobiDBLite consensus disorder prediction 77 139 - -
Vian2g00431 295 Pfam HD-ZIP protein N terminus 1 103 IPR006712 GO:0005634
Vian2g00431 295 Pfam Homeodomain 136 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00431 Vian-Chr2 5021896 5024366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00431 1 249 Homeobox Transcription Factor Family AT3G60390 56.993 2.42e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g00431 HD-ZIP_N 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00431 K09338 - gmx:100819624 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00431 2 5021896 5024366 Vian2g00431 2 5021896 5024366 ECH
Vian9g01506 9 31163128 31165677 Vian2g00431 2 5021896 5024366 PCT