Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00425 ATGGATGCATTCAAATATTCGAAGTTGACTCTTAGACTCTACAAGTCAAGCAATGCCGTCACACATGCCTGCATGCATGGCGTCAATGGCGGGGCAAAAGGCTTATCACAGTATTATAAGAATGAGCAGATAGGTAGCATGCTTTTGGTTTCCAATTTCCATCTTCTTATCTATGTTTTTGTTTTTATGGGCTCTGTTTTTGAGTTGGGATGCGCGTCTACACCTTCGCAGCTTCAGTTGGAAGCAAGCGCTGTAATCAATAGCGGATGGTGGAATCTGTCGCATTCACAGTCACTTCATATATGTTCAAAGATTGATGGTATACATTGCAATGATGCTGGAAGTGTAACTCGTATAACATATAAGTATTCCAAACAACCGATTGAATTAGCAACACTAAACCTCCCTGCTTTCAAGAATTTGGAACATCTTGAGCTCTCCTATATTCTAAAAGGTACTATTCCATCTGAAATTGGAAATATGTCAAATCTCCGTCATCTAGATTTCTCTTACAATTTTCTTCAAGTTGGACATTTTCCATTCTTGTATGGTCTGGATCTAAGCTACAATTGTCTTTCCGGAGCGATTCCTATGCCTCTTGATAGTATCTATGACATGAACCTTTCCTTCAATAATTTGAGTGGTCCTATTCCAAGTGGTGTAAATCCATATGCGCTAATTGGGAACAAGGATGTATGCAGCAACAATACAAATATACAAATCAAATACCAATTTCAGCCTTGTTCAGTCAACCAGAAGAAACGAAGGCAGCTGGTCATAATTCTTTCCATCACCATATTTCTAATCATGGCCTTCTTACTACTTTTATATCTGGGGCACAGCCGCATTGCAATCAAGAACAAACATGCAAAGATAACTGAAACATCTAAGAATGGGGACATGTTCTGCATATGGAACTACGACGGAAGCATAGCCTATGAAGACATCATTACAGTAACTGAAGACTTTGATCTTAAATATTGTATCGGAACAGGTGCGTATGGAAGTGTCTACAAGGCTCAATTACCAAGTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGACATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATTTATGAGTACATGGAGAAAGGAAGCTTGCTTTCTGTGTTGCGTTATGACATGGAAGCAATAGAATTTGACTGGAAAAAGAGGGTTAACACAGTGAAAGGAACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCATTGTTTCCGACTTTGGCACTGCCAGATTTCTAAACTTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGAGCTTGCGTATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCATTGGAGACTTTGATGGGAAAACATCCAAAGGAAATACTCTTATCACTTCAATCAACTTCTACTCACGATGACATCAAATTATGTGAAATATTGGATCAACGCCTCCCACACCCAACATTTTCAATTTTACAAGACATAGTTGTTGTTGCCATTGTGACTCTTGCATGCTTAAATCCCAACCCTTGTTCTCGTCCAACAATGAAACACATCTCTCAATGTTTCCTTAGTCAGTTCACACCACTAAGCATTCCTTTACATCATATTTCGTTGCAACAACTCATGAGTCAAGAACTCAGACACTCCTTGAAATTGTGA 1863 0.3967 MDAFKYSKLTLRLYKSSNAVTHACMHGVNGGAKGLSQYYKNEQIGSMLLVSNFHLLIYVFVFMGSVFELGCASTPSQLQLEASAVINSGWWNLSHSQSLHICSKIDGIHCNDAGSVTRITYKYSKQPIELATLNLPAFKNLEHLELSYILKGTIPSEIGNMSNLRHLDFSYNFLQVGHFPFLYGLDLSYNCLSGAIPMPLDSIYDMNLSFNNLSGPIPSGVNPYALIGNKDVCSNNTNIQIKYQFQPCSVNQKKRRQLVIILSITIFLIMAFLLLLYLGHSRIAIKNKHAKITETSKNGDMFCIWNYDGSIAYEDIITVTEDFDLKYCIGTGAYGSVYKAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLLSVLRYDMEAIEFDWKKRVNTVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPIVSDFGTARFLNFDSSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEILLSLQSTSTHDDIKLCEILDQRLPHPTFSILQDIVVVAIVTLACLNPNPCSRPTMKHISQCFLSQFTPLSIPLHHISLQQLMSQELRHSLKL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00425 620 ProSitePatterns Tyrosine protein kinases specific active-site signature. 447 459 IPR008266 GO:0004672|GO:0006468
Vian2g00425 620 Gene3D Ribonuclease Inhibitor 76 242 IPR032675 -
Vian2g00425 620 FunFam MDIS1-interacting receptor like kinase 2 402 596 - -
Vian2g00425 620 SUPERFAMILY Protein kinase-like (PK-like) 302 588 IPR011009 -
Vian2g00425 620 PANTHER LEUCINE RICH REPEAT KINASE 2 134 593 - -
Vian2g00425 620 Gene3D Phosphorylase Kinase; domain 1 283 401 - -
Vian2g00425 620 Gene3D Transferase(Phosphotransferase) domain 1 402 595 - -
Vian2g00425 620 Pfam Protein kinase domain 328 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00425 620 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Vian2g00425 620 FunFam Leucine-rich repeat protein kinase family protein 287 401 - -
Vian2g00425 620 SUPERFAMILY L domain-like 100 224 - -
Vian2g00425 620 ProSiteProfiles Protein kinase domain profile. 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00425 Vian-Chr2 4972374 4975375 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00425 150 495 Receptor kinase-like Gene Family AT4G08850 43.935 1.55e-84 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00425 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00425 - - vum:124822324 870.152