Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00423 ATGCAGTTTTTGGTTTCCAATTTCCATCCTGTTATTTATGTTTTGGTGTTTATAGGCTCTGTTCTGAAGTTGGGATGCGCGTCGTCTACACCATCGCAGCTTCAATTGGAAGCAAACGCTATAATCAATAGCGGATGGTGGAATTTGCCGCACTCACAGTCACTTCATATATGTTCATTGATTGAGGGTATACATTGCAATGATTTTGGAAGTGTAACTCGTATCACATATCTGTATTCCGAGCGACCCATTCAATTAGCAAATCTAAACCTTTCTGCTTTTAAGAATTTGGAACATCTTGAGGTCTCCTTCTGTAGTCTAGAAGGTATTATTCCATCTGAAATTGATAGTCTTTCCAAACTTACTTATCTTGATTTATCTCATACTTCCATTCATGGAGAGATACCTCTTACAATAGGAAATCTTTCCAATCTCACTTATCTCGATTTGTCCTACGATTCTATTTCTGGTCAGGTGCCTCTTTCAATGGGAAATCTAATTCAACTATCCACACTAATCATTTCTAACAACTACATTGAAGGCCCTGTTCCTTTTGAATTGTCATTCTTGAAGAATCTTACTATCATTGATCTATCTTACAACAAAATCAATGGAGCTTTGCCTATTTCACTTTCAAACCTCACGAACCTTCAAAATCTTGACATTTCACACAATCTACTCTCCGGTTCCCTTGAACCTTTCTTAGTTGGATATTTTCCATTATTGGAAACTCTGGATCTAAGCTACAATAGTCTTACCGGAGGGATTCCTCTGTCCCTACATAATGTCCGCTATGTGGACCTTTCCTTCAACAATTTGAAGGGTCCCATTCCAAACGGTGTACATCCGTTTGCGCTAATGGGGAACAAGGGTGTATGCAGCAACATTACAAATATACGAATCCAATACCAATTCCAGCCTTGTTCAGTCAGTCAGAAGAAACGAAGGAAACTGGTCATAATTCCTACTATCACCATATTTCTAATCATGATCTTCTTACTACTTCTATATCTGAGGCACAATCGCATTACAATCAAGAACAAACATTCAAGGATAAGTGAAACATCTAAGAATGGGGACTTGTTCTGCATATGGAACTATGACGGAAGCATAGCCTATGAAGATATCATCATAGTTACTGAAGACTTTGACCTCAAATATTGTATTGGAATAGGTGCGTACGGAAGTGTTTTCAAGGCTCAACTACCAAGTGGCAAGATTGTTGCGGTGAAAAAACTCCATGGCTTTGAAGCAGAGGTCCCGACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCAAAAATAAAGCATCGACATATAGTCAAGCTCCATGGATTTTGCTTGCACAAAAGAATAATGTTTTTGATATATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTGTTGTTTGATGACATGAAAGCAATGGAATTGGATTGGAAAAAGAGGATTAACACAATAAAAGGCACTGCGCATGCTATCTCATATCTCCATCATGATTGTGTTCCTCCTATAGTTCATAGAGACATATCAACAAGCAACGTCTTGCTTAACTCTGAGTGGGAGCCCACTGTTTCCGACTTTGGCACAGCTCGATTTCTCAACCTTGATTCATCCAATCGAACTATTGTTGTTGGAACCATTGGATACATAGCACCTGAGCTTGCATATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGACACTGGAAACTTTGATGGGAAAACATCCTAAGGAAATACTCTCATCACTTGATTCAACTTCTACAAATAGTGACATCAAATTATGTGAAATATTGGATCAACGCCTCCCGCACCCAACATTTTCAGATTTACAAGACATAGTTGTTGCTGCTATTATGGCTTTTGCATGTTTAAATCCCAATCCCTGCTTTCGTCCAACAATGAAACGCATCTCTCAATGTTTTCTTAGTCGGCTTACACCGTTCAACATTCCTTTACGTCTTATTTCATTGCAACAGCTCATAAGTCAAGAACTCAGACATCCTTAA 2034 0.3854 MQFLVSNFHPVIYVLVFIGSVLKLGCASSTPSQLQLEANAIINSGWWNLPHSQSLHICSLIEGIHCNDFGSVTRITYLYSERPIQLANLNLSAFKNLEHLEVSFCSLEGIIPSEIDSLSKLTYLDLSHTSIHGEIPLTIGNLSNLTYLDLSYDSISGQVPLSMGNLIQLSTLIISNNYIEGPVPFELSFLKNLTIIDLSYNKINGALPISLSNLTNLQNLDISHNLLSGSLEPFLVGYFPLLETLDLSYNSLTGGIPLSLHNVRYVDLSFNNLKGPIPNGVHPFALMGNKGVCSNITNIRIQYQFQPCSVSQKKRRKLVIIPTITIFLIMIFLLLLYLRHNRITIKNKHSRISETSKNGDLFCIWNYDGSIAYEDIIIVTEDFDLKYCIGIGAYGSVFKAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSKIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLFSVLFDDMKAMELDWKKRINTIKGTAHAISYLHHDCVPPIVHRDISTSNVLLNSEWEPTVSDFGTARFLNLDSSNRTIVVGTIGYIAPELAYTMVVNEKCDVYSFGVVTLETLMGKHPKEILSSLDSTSTNSDIKLCEILDQRLPHPTFSDLQDIVVAAIMAFACLNPNPCFRPTMKRISQCFLSRLTPFNIPLRLISLQQLISQELRHP 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00423 677 ProSiteProfiles Protein kinase domain profile. 383 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00423 677 FunFam Leucine-rich repeat protein kinase family protein 347 461 - -
Vian2g00423 677 Pfam Protein kinase domain 388 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00423 677 Gene3D Transferase(Phosphotransferase) domain 1 462 655 - -
Vian2g00423 677 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vian2g00423 677 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vian2g00423 677 Gene3D Ribonuclease Inhibitor 186 302 IPR032675 -
Vian2g00423 677 Gene3D Ribonuclease Inhibitor 32 185 IPR032675 -
Vian2g00423 677 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Vian2g00423 677 FunFam Nuclear pore complex protein NUP107 32 185 - -
Vian2g00423 677 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Vian2g00423 677 PANTHER LEUCINE RICH REPEAT KINASE 2 190 652 - -
Vian2g00423 677 SUPERFAMILY Protein kinase-like (PK-like) 364 648 IPR011009 -
Vian2g00423 677 SUPERFAMILY L domain-like 48 344 - -
Vian2g00423 677 Gene3D Phosphorylase Kinase; domain 1 344 461 - -
Vian2g00423 677 ProSitePatterns Tyrosine protein kinases specific active-site signature. 507 519 IPR008266 GO:0004672|GO:0006468
Vian2g00423 677 FunFam MDIS1-interacting receptor like kinase 2 462 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00423 Vian-Chr2 4949597 4951789 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00423 106 555 Receptor kinase-like Gene Family AT4G08850 40.598 1.06e-103 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00423 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00423 - - var:108327175 1312.36