Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00410 ATGGCAGGAAGTTCATGCAAGGTTGCCTTTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCCACGTTCGACGAATTTCTCCAAGAACGAGCTGAAGAGGCCCATGAAATCGCTCTTAAATCCTACGTGCCTGACCCTACAAACGCTACTTCCCACCAAGATATTCACGATGACGAGGATTTTAAGAAGACTTCAAAGAAGGAATCAAACATCACAAGGAGGGAGCTGAAGCAGAATGAGAAGAAGAAATACACTGGACCTTGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAGGCTGGGCCAAAAACCGTTTTAAGTTAGCCAATTGCGTGAAGGGTTTTGGAAGAAGGGCCATCGGAGGAGCCAACGGAAAAATCTACACTGTCACTGATCCCTCCGACGATGATCCCGTTAACCCAAAACCAGGAACCCTACGCTACGCGGTTATACAAAAGGACCCACTGTGGATCATATTTTCACGAAGCATGGTCATCAAGCTGAATTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGGTACAGCGTGGTGATCAAGGATGGCGCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAAAATACATAAGATCAAGTCCACGCCAGGTGGCATGATCAGGGACTCTTGGGACCATGTCGGAATAAGAACAAGGGCTGATGGGGATGCCATCTCCATTTTTGGCTCTTCAAACATTTGGATCGATCACATCTCACTCGCTGATTGCGAGGATGGTCTCGTCGACGTTATCCAGGGATCCACTGCAATCACCATCTCAAATTGCCACATGACCAAACATAACGATATGGGGTTTCTTCCATGGCCAACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGATAGTGACGCACAGGGACTATGCACCGTCTTCTGAGTGGGAGAAATGGCAATGGAGATCAGAAAACGATGTCTTCATGAATGGGGCTAAGTTTATTCAGTCAGGGAAACCTCTTGGTAAGCTTCCATTTAACAAAGGGTTTCTCATGAAACCTAGACATGGGTCACAAGCCAACAGGCTCACACGCTTTGCTGGATTCCTCAACTGCAAGGTGGGAAGCCCTTGCTAG 1179 0.4767 MAGSSCKVAFILVAFAITIPCLEAGIATFDEFLQERAEEAHEIALKSYVPDPTNATSHQDIHDDEDFKKTSKKESNITRRELKQNEKKKYTGPCLALNPIDRCWRCKKGWAKNRFKLANCVKGFGRRAIGGANGKIYTVTDPSDDDPVNPKPGTLRYAVIQKDPLWIIFSRSMVIKLNYELLISSDKTIDGRGYSVVIKDGAGLTMQFVNNVIIHGLKIHKIKSTPGGMIRDSWDHVGIRTRADGDAISIFGSSNIWIDHISLADCEDGLVDVIQGSTAITISNCHMTKHNDMGFLPWPTILSQGNRFIAPNNDAAKIVTHRDYAPSSEWEKWQWRSENDVFMNGAKFIQSGKPLGKLPFNKGFLMKPRHGSQANRLTRFAGFLNCKVGSPC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00410 392 MobiDBLite consensus disorder prediction 49 75 - -
Vian2g00410 392 SUPERFAMILY Pectin lyase-like 118 392 IPR011050 -
Vian2g00410 392 MobiDBLite consensus disorder prediction 57 75 - -
Vian2g00410 392 PANTHER PECTATE LYASE 18-RELATED 299 390 IPR045032 GO:0030570
Vian2g00410 392 Pfam Pectate lyase, N terminus 26 82 IPR007524 GO:0030570
Vian2g00410 392 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vian2g00410 392 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vian2g00410 392 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vian2g00410 392 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vian2g00410 392 SMART amb_all 172 314 IPR002022 -
Vian2g00410 392 Gene3D - 298 385 IPR012334 -
Vian2g00410 392 Gene3D - 97 296 IPR012334 -
Vian2g00410 392 Pfam Pectate lyase 183 293 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00410 Vian-Chr2 4740877 4742368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00410 12 392 Polysaccharide Lyase AT3G01270 45.043 1.53e-130 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00410 K01728 - gmx:100780236 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00410 2 4740877 4742368 Vian2g00410 2 4740877 4742368 ECH