Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00409 ATGTCCATGGCAGAAGGTGAGCTTCAAGCTACACGGTGTGTCAAGAGACGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGACGATAGCCACCACCAGCAGTTACCAAAACAACACGGTGGTGAAAATTCTACAATCAACACAACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAATATAACACAGAAGAAAAAAGGGAAGCAAGGTAGAGTTCCTCCTTCTGGTGTTTTCGCATCAACTGCTGCTCTATATATTTCTTACTTTCCTCTTTACCTTGGGGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGATTTAGCCGCACTTAAGTATTGGGGAACTTCAACCTTCACCAATTTTCCAATATCTGATTACGGGAAAGATATGGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCAACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCGAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTCGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTTGGCACCTATGGCACCCAAGAGGAAGCTGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGGATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGGAAGCAGCCCAGAAGCAAAACTTGAAACACATGCAGTTCTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTAACAGAAGAGTCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGAAAATTTTGGAAGCAAACCCTACCCATTCTCAAGCAGTAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTCAGAGAATTGGTTGAGAAGAATTCAAATGTATCTGGAGATGAAGCTGATGATGGGGAAGTCAGAAAAAGTGAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGTATTGGTGATATCCCATTTGTTTGTGATCTCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1194 0.4271 MSMAEGELQATRCVKRRRREVAAAVSSGDDSHHQQLPKQHGGENSTINTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGRVPPSGVFASTAALYISYFPLYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYGKDMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDLAAIEYRGINAVTNFDLSTYIKWLKPGGGSSPEAKLETHAVLEGQKVASPSNYSLTEESKSSVIHNSFFSLDSLNSPVGQENFGSKPYPFSSSKSSSPTALGLLLRSSLFRELVEKNSNVSGDEADDGEVRKSEQPQIASDDDLGGIFFDSIGDIPFVCDLNRYNLELQERDLHSIF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00409 397 CDD AP2 54 144 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 MobiDBLite consensus disorder prediction 339 358 - -
Vian2g00409 397 SUPERFAMILY DNA-binding domain 177 238 IPR016177 GO:0003677
Vian2g00409 397 SMART rav1_2 178 242 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 SMART rav1_2 55 148 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 CDD AP2 177 238 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 FunFam AP2-like ethylene-responsive transcription factor 177 238 - -
Vian2g00409 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 38 305 - -
Vian2g00409 397 SUPERFAMILY DNA-binding domain 106 144 IPR016177 GO:0003677
Vian2g00409 397 MobiDBLite consensus disorder prediction 19 58 - -
Vian2g00409 397 MobiDBLite consensus disorder prediction 339 359 - -
Vian2g00409 397 ProSiteProfiles AP2/ERF domain profile. 55 142 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 ProSiteProfiles AP2/ERF domain profile. 178 236 IPR001471 GO:0003700|GO:0006355
Vian2g00409 397 MobiDBLite consensus disorder prediction 28 54 - -
Vian2g00409 397 Gene3D AP2/ERF domain 177 238 IPR036955 GO:0003700|GO:0006355
Vian2g00409 397 Gene3D AP2/ERF domain 54 144 IPR036955 GO:0003700|GO:0006355
Vian2g00409 397 Pfam AP2 domain 177 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00409 Vian-Chr2 4735254 4737235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00409 51 279 AP2-EREBP Transcription Factor Family AT5G57390 54.274 2.52e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g00409 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00409 - - gmx:100779867 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00409 2 4735254 4737235 Vian2g00409 2 4735254 4737235 ECH