Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00401 ATGTTGAAGCGGTCCATGTCGTTTTCGGGCATTGAGAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGATTGAGCCAGAAAGGAAAGTGCAGTTAGCAAAGGCTTTGGGGTTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGAGTCAGAATCAGAAATTACAGGCAGAGATATCTGTATTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAAATGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTCATTTAGAACTCTCAAGAGCACCAATTATGAACAACGCTACATCTTGTCAAGCACCTTTTCCCACCAGCATCACTCAGATCCTTCAATATTCGTCAAAACCAGATTTCCATGATGATGACTTCTGCAACGTGATTCACAATGCTGCACAACAAACCTTTTGGCCCTGGCCTGGTCAACAGAGCCACCATTTCCATTGA 681 0.4332 MLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKIEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKSQNQKLQAEISVLQAVKSRGWCENGIISLKKETEGSWSNGSDNSSDIHLELSRAPIMNNATSCQAPFPTSITQILQYSSKPDFHDDDFCNVIHNAAQQTFWPWPGQQSHHFH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00401 226 SUPERFAMILY Homeodomain-like 29 92 IPR009057 -
Vian2g00401 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 23 177 IPR045224 GO:0003700
Vian2g00401 226 SMART HOX_1 33 94 IPR001356 GO:0003677
Vian2g00401 226 Coils Coil 82 130 - -
Vian2g00401 226 Pfam Homeobox associated leucine zipper 90 129 IPR003106 GO:0006355|GO:0043565
Vian2g00401 226 Gene3D - 30 100 - -
Vian2g00401 226 CDD homeodomain 35 91 IPR001356 GO:0003677
Vian2g00401 226 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Vian2g00401 226 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Vian2g00401 226 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Vian2g00401 226 FunFam Homeobox-leucine zipper protein ATHB-13 26 94 - -
Vian2g00401 226 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Vian2g00401 226 Pfam Homeodomain 35 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00401 Vian-Chr2 4638580 4640037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00401 1 217 Homeobox Transcription Factor Family AT3G01220 48.936 9.85e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g00401 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00401 K09338 - gmx:100797920 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00401 2 4638580 4640037 Vian2g00401 2 4638580 4640037 ECH
Vian8g00292 8 4736976 4739371 Vian2g00401 2 4638580 4640037 PCT