Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00396 ATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCCACCAAATCAAATCAGCACCGGATTGTTAAGACACCTGGTGGGAAGTTGGTGTACCAGAGCACTAAGAAGAGGGCTAGTGGACCCAAGTGTCCTGTCACTGGGAAGAGGATCCAAGGGATCCCCCACTTGAGACCTACTGAATACAAGAGGTCTAGATTGTCTAGGAACCGCCGGACAGTTAACCGGGCCTATGGAGGTGTTTTATCTGGTGGAGCTGTTAGAGAAAGGATTATTCGGGCTTTCCTCGTTGAAGAACAGAAAATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAGGCCGCTAAGAGTTAA 363 0.4793 MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00396 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 Gene3D - 39 120 - -
Vian2g00396 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Vian2g00396 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vian2g00396 120 MobiDBLite consensus disorder prediction 31 51 - -
Vian2g00396 120 Gene3D - 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00396 Vian-Chr2 4548459 4550135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00396 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 93.277 2.35e-77 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00396 K02915 - aew:130778894 195.667