Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00393 ATGCAGAGCATGAGGAGAGTGATTCTGAGAAGACAGCCCCCTCGACGATGCCCGACCAATAACACGGTGACGATCGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGCTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAACTGCTGGGGCTCTGATTTGTGGTGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGATACATATTCAAGTTACTTGTCGCTGCACTTCTTCTGACAATGCATAG 288 0.5035 MQSMRRVILRRQPPRRCPTNNTVTIVRNVQHGECQRNHAINVGGFAVDGCMEFFPSGAEGTAGALICGACGCHKNFHRREIHIQVTCRCTSSDNA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00393 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 31 80 IPR006456 -
Vian2g00393 95 Pfam ZF-HD protein dimerisation region 29 81 IPR006456 -
Vian2g00393 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 82 - -
Vian2g00393 95 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 32 81 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00393 Vian-Chr2 4465798 4466085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00393 26 91 Zinc finger-homeobox gene family AT3G28917 64.179 1.73e-26 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian2g00393 ZF-HD_dimer 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00393 - - vra:106758454 181.8