Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00392 ATGGACATAACCCCAACAACAACCATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCAACCAAGGCCTTGTCTTTCTCCAACGGGGTCCTCAAGCGACACCATCACCACCACCACCACCCCATCCCCGCCGCCGTCACCTACAAGGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGGCACGCTTTAGATGGATGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCAGATGAGCCGCCCATCGCATCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCTCCGCCTCCGTTCCAGGCAGCGGGGGCGAATCGAAGTCCGAATTCTGCATCCCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCTCCGCACATGCTCCTTGCCCTTTCCGCCGGGCTCGCCGCTCCGCCTGAGAGCACGGCCGCACCCTCCGCGCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATAATATTACTAATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGAAGACCCTAATAGCAACATCGGTGGTGGTGCTGAAGATCACAGTGAGGATCCGAGTCGCAATCACTTTGGTGGGTTGAACGTTGGTGCTAATGCTAACGGGTCTTCTTCTACTTCTTGA 972 0.5401 MDITPTTTINNTTPSATTKSPEHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHPIPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQAAGANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEIGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDNITNNINDNDANGGVKGFEEDPNSNIGGGAEDHSEDPSRNHFGGLNVGANANGSSSTS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00392 323 MobiDBLite consensus disorder prediction 146 160 - -
Vian2g00392 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Vian2g00392 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 252 - -
Vian2g00392 323 MobiDBLite consensus disorder prediction 1 36 - -
Vian2g00392 323 MobiDBLite consensus disorder prediction 272 323 - -
Vian2g00392 323 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Vian2g00392 323 MobiDBLite consensus disorder prediction 131 161 - -
Vian2g00392 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Vian2g00392 323 SUPERFAMILY Homeodomain-like 185 254 IPR009057 -
Vian2g00392 323 Gene3D - 182 255 - -
Vian2g00392 323 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Vian2g00392 323 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00392 Vian-Chr2 4436023 4436994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00392 1 249 ZF-HD Transcription Factor Family AT5G15210 53.785 2.38e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian2g00392 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00392 - - gmx:100786999 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00392 2 4436023 4436994 Vian2g00392 2 4436023 4436994 ECH
Vian8g00303 8 5039462 5040472 Vian2g00392 2 4436023 4436994 PCT