Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00389 ATGGAAGGTACCAGCCCAAACACGTTTACCTTCATCACCACCACCATCGACGCTCCAAGTCCAAGCAACCCTGAGATATCACCATCTCCTTCTGCTCTTTCAGGACTCGCACAAACTTACCCTCCTGGTTTTTCCAGAAAGGTGTTTGCGGAGGTTATCGGAACGTTTCTGTTGGTGTTCGTGGGAAGTGGTTCTGCGGGTCTCAGTGTTATTGATGAGAGCAGAGTGTCAAAGCTCGCAGCTTCGCTTGCTGCAGGACTCATCGTCACAGTGATGATTTACTCAATTGGACACATTTCTGGAGCACACATGAACCCTGCGGTTTCCCTTGCTTTTGCTGCCGTGAGGCATTTTCCGTGGCCACAGGTCCCGTTTTACGTAGTAGCTCAACTCACTGGATCCATTTCTGCTTCATACACATTGCGAGAGCTTTTCCAGCCATCAAAGGAAATTGGGGGAACAACACCTGCTGGATCACATATCCAAGCACTGATCGTGGAAATGGTGACTACTTTCACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAACTATCAGGAGTAGCAGTAGGTTGTTCTGTTAGCATATCAAGCATTGTTGCCGGACCAATATCGGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACATCAACCTACAAGGGACTTTGGGTATATTTTGTTGGACCAATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAACGTGATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGGTACGCCAAAGCGTTAGTGGAACCAAAACCGACCAACGAAGCTTGGTTTGA 867 0.4821 MEGTSPNTFTFITTTIDAPSPSNPEISPSPSALSGLAQTYPPGFSRKVFAEVIGTFLLVFVGSGSAGLSVIDESRVSKLAASLAAGLIVTVMIYSIGHISGAHMNPAVSLAFAAVRHFPWPQVPFYVVAQLTGSISASYTLRELFQPSKEIGGTTPAGSHIQALIVEMVTTFTMVFISMAVATDTNATGQLSGVAVGCSVSISSIVAGPISGGSMNPARTLGPAIATSTYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSVSGTKTDQRSLV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00389 288 Gene3D Glycerol uptake facilitator protein. 28 260 IPR023271 -
Vian2g00389 288 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PANTHER AQUAPORIN NIP2-1 34 259 IPR034294 -
Vian2g00389 288 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
Vian2g00389 288 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vian2g00389 288 NCBIfam MIP family channel protein 50 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00389 288 MobiDBLite consensus disorder prediction 1 29 - -
Vian2g00389 288 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00389 Vian-Chr2 4379386 4382533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00389 45 283 Major Intrinsic Protein MIP AT5G37820 47.303 4.82e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00389 K09874 - gmx:100788071 439.884