Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00386 ATGTCAAAAAAACTTTCGTACAATCCCTCCTTTAGGGTTCCTTTACTTCTCAATGATGAGGAGAAAGCCATTGCCTCTTCTGCAAAAAATACTGTATCCTTCTTTCGTACATGCCTTAATGGACTCAATACAATAGCAGGTGTTGGCATACTCTCGGTTCCTTATGCTCTTGCAACAGGAGGCTGGTTAAGCTTGGTTCTTCTGTTTTCTATTGCCGCTGCTGCATTTTACACGGGCCTTCTGATTAAAAGATGCATGGATAAGGACTCAAACATCAGAACCTACCCTGATATAGGTGAACTTGCATTTGGAAAGACAGGAAGACTGATAGTGTCAATATCCATGTACACGGAACTATATCTGGTTTCAATAGGATTCTTGATTCTAGAAGGTGATAACTTGAGTAACATATTCCCCATTGGAGAGGTTCACATAGCAGGCTTAGCAATTGGTGGGAAGCAATTATTTGTGATTATGGTTGCCCTTATCATCTTGCCCACGGTTTGGTTGGACAACTTGAGTCTACTCTCTTATGTATCTGCAAGTGGAGTCTTCGCTTCTGTTCTCATCATCCTTTCAATAACATGGACTGCAACATTTGATGGAGTTGGTTTTCATCATAAAGGAACTCTTGTCCATTGGAATGGTCTCCCCACAGCTGTTAGCTTGTATGCCTTCTGTTATTGCGCACATCCTGTCTTTCCCACATTGTACAATTCGATGACAAACAAACATCAGTTCTCTAACGTCTTACTTGTATGTTTTCTCCTAACCACTGTGGGTTATGCATCCATGGCTATAGTGGGTTATTTAATGTTTGGTAACGGGGCTGAATCTCAAGTAACATTGAACCTGCCTCTGGACAAACTCAGCTCAAAATTAGCAATATACACAACCTTGGTGAATCCCATATCCAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTGAAAGATTTGCTTCCAAAGACGTACAAGAATAGGGTGACGAGCATCTTACTGAGCACAGTGTTGGTATTGAGCACCACCGTTGTTGCCCTTGCTGTCCCTTTCTTTGGGTCTCTCATGTCACTGGTTGGAGCCTTTCTAAGTGTCACAGCTTCTATTCTGCTTCCGTGCTTGTGCTACTTGAAGATTTCGGGCACTTACAGGAAATTTGGGTGTGAGACGGTAGTCATAGTGATAATAATAATGATAGCTATTGTAATGGCAATTTCAGGGACCTACATCTCTCTCATGGAAATAGCCCACAATTTATAA 1263 0.4157 MSKKLSYNPSFRVPLLLNDEEKAIASSAKNTVSFFRTCLNGLNTIAGVGILSVPYALATGGWLSLVLLFSIAAAAFYTGLLIKRCMDKDSNIRTYPDIGELAFGKTGRLIVSISMYTELYLVSIGFLILEGDNLSNIFPIGEVHIAGLAIGGKQLFVIMVALIILPTVWLDNLSLLSYVSASGVFASVLIILSITWTATFDGVGFHHKGTLVHWNGLPTAVSLYAFCYCAHPVFPTLYNSMTNKHQFSNVLLVCFLLTTVGYASMAIVGYLMFGNGAESQVTLNLPLDKLSSKLAIYTTLVNPISKFALMATPITNALKDLLPKTYKNRVTSILLSTVLVLSTTVVALAVPFFGSLMSLVGAFLSVTASILLPCLCYLKISGTYRKFGCETVVIVIIIMIAIVMAISGTYISLMEIAHNL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00386 420 PANTHER OS05G0424000 PROTEIN-RELATED 41 404 - -
Vian2g00386 420 Pfam Transmembrane amino acid transporter protein 31 412 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00386 Vian-Chr2 4315273 4316806 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00386 17 416 Amino Acid or Auxin Permease AAAP Family AT3G28960 57.855 3.70e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00386 K15015 - gmx:100794374 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00386 2 4315273 4316806 Vian2g00386 2 4315273 4316806 ECH