Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00376 ATGTCGGAGCCAAAAGACCCGACGATCAAGCTCTTCGGGAAGACGATCCCCTTGTCGGAGATTCCGACTGGATCCGCCGGAGCTCCGGCTTCGTCTTCCGGTGACCTTGTTGATGACAGTGTTGAACACAGCCATGCTTCTTCCTCCAACTCCTCCCTGGAGTCTCATACGCGAGAGGAAGGTGTTGTGGACGAGGACTCACTGGGAGAAAAACCAGCTGATGATAAGAAGGAAGCCCCAACCCAATCATTAGAAGAGGTCAACAATCCAGATACGGTCTCTGGAACCTGTGAAGAATCCATTACTGAACCAACTGACAAGGAGACCACTACATTGAAAACCTCGAAAACTGAAGAAGAACTAAGCGAGACAAGTAAGTCACAGGATAAGAACCTCAAAAAACCAGATAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGTCTTCTCACTATCGCCAGATAACTGTTCCTGATGCTGCCCTCCAGAATCCTCAACTAGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGCAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATCGCATCCGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTTATAAACCTGAAGAACTAAAAGTTCCAGTTCCACATGCCAGTGGAGAAAAAAGAGATGATCAATCCAGTAAATCTTCAGTTACCTCTACAAAGTCAGTGGAAGGTGCAAGCACCAATGGAGCCCAAGAACAAGCTATGCCAAACTGTCATCGTTTCCCACCACAGGTTCCTTACTATACCGGTAACTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCTCCTCCTTTTTGTCCCCCCGGATTCGCCATGCCACTCTATCCTGCTGCAGTTTATTGGGGTTGTGCTGTGTCTGGTGCATGGAACATCCCATGGGTAGCACAACCATCCTCACCGAAGGGTGCAACTTCAAATTCTGGCTCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAATCAAATGAATCTGGTGGTGATGAGGATGGACACAACAAAGAAAACAACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCTGGAGAAGCAGAAAAAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTAGGGAAACACTCTTTAAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATCCAAGCCTCACCAGTATTGCAGGCCAATCCTGCAGCGTTGTCAAGGTCACTTAAGTTTCATGAGACCTCATAG 1506 0.4628 MSEPKDPTIKLFGKTIPLSEIPTGSAGAPASSSGDLVDDSVEHSHASSSNSSLESHTREEGVVDEDSLGEKPADDKKEAPTQSLEEVNNPDTVSGTCEESITEPTDKETTTLKTSKTEEELSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVPDAALQNPQLDLPNGAYHPSLKCNGAVLTFGSDTPLCESIASVLNLADKTVHNYARNGFYKPEELKVPVPHASGEKRDDQSSKSSVTSTKSVEGASTNGAQEQAMPNCHRFPPQVPYYTGNSWPIPWNPVQWSSPVPPPPFCPPGFAMPLYPAAVYWGCAVSGAWNIPWVAQPSSPKGATSNSGSNSPTLGKHSREDNILKSNESGGDEDGHNKENNKEKCLWVPKTLRIDDSGEAEKSTIWTTLGIKNDKADSVPRETLFKGFPSKLDEKNHSIQASPVLQANPAALSRSLKFHETS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00376 501 MobiDBLite consensus disorder prediction 1 138 - -
Vian2g00376 501 MobiDBLite consensus disorder prediction 101 137 - -
Vian2g00376 501 MobiDBLite consensus disorder prediction 273 311 - -
Vian2g00376 501 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vian2g00376 501 PANTHER CYCLIC DOF FACTOR 2 1 501 IPR045174 GO:0003700|GO:0006355
Vian2g00376 501 MobiDBLite consensus disorder prediction 397 421 - -
Vian2g00376 501 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Vian2g00376 501 MobiDBLite consensus disorder prediction 83 100 - -
Vian2g00376 501 MobiDBLite consensus disorder prediction 287 307 - -
Vian2g00376 501 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vian2g00376 501 MobiDBLite consensus disorder prediction 376 421 - -
Vian2g00376 501 MobiDBLite consensus disorder prediction 57 82 - -
Vian2g00376 501 MobiDBLite consensus disorder prediction 376 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00376 Vian-Chr2 4209347 4212353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00376 6 501 C2C2-Dof Transcription Factor Family AT5G39660 44.530 2.27e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g00376 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00376 - - gmx:100788247 743.421