Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00367 ATGGGACGATCACCATGCTGTGACAAGGTGGGGCTAAAGAAAGGGCCATGGACTCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAGGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCACCGAGGGCCATTCCAAGAGTGCATCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCATTGCAGCATTCTCTAATTGGCACTTCTGCATCATCATCATCGTCTTCAGCTCCACTGTTACCCTCTTCAACACGTTCTCTTGATCACGCTTGGAACAATGGTAGTAGTACTAGTACGGTTGCAACGAGGGTCAGTGAGTCCCCCACTTCTACCTTATCTGAGAACAATGCACCGGCAGTTATGACTAGTGTGATTGAGTTTGTTGGTTCTTCTGAGAGAGCGATGGTGAAGGAAGAAGGAGAGCGAGAATGGAACAAAGGTTTTCATGAAAGCTCCACCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCCATGCCCTTCACGTCTAGTCTGCATGAGTTGACAGTGACCATGGCAACCACGTGGGGTTCCGGCACTACCAGTGCACATGAACATGGACATGTTTCTGAGGAGGGATTCACCAACCTTTTGCTGAATTCTAATTCCGATCACCGGAGTTTGTCGCCGGAGGGTGGTGGAGAGTCTAATAATAATTGTCTCGGTAATGGTAGCGATGGTCATAACAATGGTAACGATAACGAGTTATACGAAGATAACAAGATCTATTGGAACAACATTCTTAATTTGATGAACTGTTCTTCCCCTTCGAATTCACCCATGTTCTGA 1164 0.4613 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSTEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLQHSLIGTSASSSSSSAPLLPSSTRSLDHAWNNGSSTSTVATRVSESPTSTLSENNAPAVMTSVIEFVGSSERAMVKEEGEREWNKGFHESSTHLGEYKDGMENSMPFTSSLHELTVTMATTWGSGTTSAHEHGHVSEEGFTNLLLNSNSDHRSLSPEGGGESNNNCLGNGSDGHNNGNDNELYEDNKIYWNNILNLMNCSSPSNSPMF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00367 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian2g00367 387 FunFam MYB-related transcription factor 13 66 - -
Vian2g00367 387 CDD SANT 69 112 IPR001005 -
Vian2g00367 387 CDD SANT 16 61 IPR001005 -
Vian2g00367 387 Gene3D - 13 66 - -
Vian2g00367 387 MobiDBLite consensus disorder prediction 170 233 - -
Vian2g00367 387 SMART sant 13 63 IPR001005 -
Vian2g00367 387 SMART sant 66 114 IPR001005 -
Vian2g00367 387 MobiDBLite consensus disorder prediction 168 233 - -
Vian2g00367 387 FunFam Transcription factor MYB39 68 136 - -
Vian2g00367 387 MobiDBLite consensus disorder prediction 121 148 - -
Vian2g00367 387 Gene3D - 68 141 - -
Vian2g00367 387 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian2g00367 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian2g00367 387 MobiDBLite consensus disorder prediction 325 356 - -
Vian2g00367 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian2g00367 387 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian2g00367 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian2g00367 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian2g00367 387 MobiDBLite consensus disorder prediction 325 358 - -
Vian2g00367 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00367 Vian-Chr2 4091920 4094582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00367 1 387 MYB Transcription Factor Family AT3G01140 51.232 8.35e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g00367 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00367 K09422 - gmx:100794047 620.157