Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00365 ATGTATCAAGTTATGACTAGTGTGAAAGCAGCTTGTGTGATGATGGAAGGAAGAGTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCTTCTCAGAGAATGCGTGCAACTCTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTCGACTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTCAGTGAAGATGAGGTCGATTTGATGATCAGATTGCATAAGCTTTTGGGGATCAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGGAAAGTACAATCTCACAACAGAGATGAGGAGAACAACAACAACAATGTGAAAGAATCCGAAAGAAGTTGGAAACCCCACAAAGTGATAAAGCCTGTGCCTCGAGCTTTGGCAAAAGCATCGGCCATGGTGCATGGGAAATTGATGAGTAGTTCGAAAGTTGGTGTTAGTGAAGCAGTTTCAGCAGGGTCTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGAGAACATTAACAACAGCACGTGCTTCCCTGTTGGGAAAGATGGATCATTTGAGCTTTGGGATGAAGAACTTGTCTCCATTCCTTCTGAGTTTTTTGCAGAAGCTGAAACATGGAGCGATTTTCTTCTTAACTAA 732 0.4331 MYQVMTSVKAACVMMEGRVSGVRKGAWSQTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGIRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHNRDEENNNNNVKESERSWKPHKVIKPVPRALAKASAMVHGKLMSSSKVGVSEAVSAGSENWWETLLDDKEENINNSTCFPVGKDGSFELWDEELVSIPSEFFAEAETWSDFLLN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00365 243 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vian2g00365 243 MobiDBLite consensus disorder prediction 125 148 - -
Vian2g00365 243 Gene3D - 24 76 - -
Vian2g00365 243 FunFam Myb transcription factor 24 76 - -
Vian2g00365 243 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vian2g00365 243 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Vian2g00365 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Vian2g00365 243 CDD SANT 26 71 IPR001005 -
Vian2g00365 243 Gene3D - 79 153 - -
Vian2g00365 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 75 IPR017930 -
Vian2g00365 243 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Vian2g00365 243 CDD SANT 80 122 IPR001005 -
Vian2g00365 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 20 148 - -
Vian2g00365 243 SMART sant 76 124 IPR001005 -
Vian2g00365 243 SMART sant 23 73 IPR001005 -
Vian2g00365 243 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vian2g00365 243 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00365 Vian-Chr2 4070912 4071937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00365 21 165 MYB Transcription Factor Family AT1G66370 59.589 8.98e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g00365 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00365 - K16166 pvu:PHAVU_008G038600g 381.333