Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00357 ATGGCAAGGAAGAGAAAGGCTTCTGAAGAAGTTAAAGAGAGAAATTTATCTGATGAAACCATGGCATGGGATGAGGTAATGAAGGAAGCTGCTGCACTAGGAAGTGGCAGGAAATTGAGGAAGAGATTTGTTGGTGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATAAAGGATACAATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCATGTGTTCTTCGAGGTGCCAACACTAGAACAAACTTCTGGCTCAGTTATCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAATGACACTAGCACAAAGCCTTGCACTGTTTCTTCATCTTCCTCCTCCACATCTCTTTTAATCAACCAGCAACAAAGCCAACAAGAAGATGTACGTGGAACTGAGTCAACATATTTCACATTGGACCAATTCTCAGATTTCCTTAATGACCCTGAAGATTACAGCACAAACAACAATGAGTTTAGTAATGACAGTGCACAAACGGATTGCATCACAAATAGTCTTGAATCATGTTTGAATGAGAATGATGATTGCAGGGAAATCGAAAAAGAAATGGTAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATGTAAATTCAGGAGGGGAAAGAGAGGAAGACAGTGAAGAAGGAACTGATTTGAGTGCTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCTAGTTATCATTATTCACTTTTTGAGATCACTGAAGAGATTGAGGAGCAGCTGGAGGCTGAAAACTGTGGTGATGAGCCTTCAATGTTTAGAGAAGTCTTGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAAGTTGAACCAGTAAACAAAAATAGAAGTGGGGTTTGTATTTCTAATGAACTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGCTATTGAGAAGAATGAAGAACACATAGAAGCGATGGATGGGAAAGAGCCACAAACATCAGTTGGCATGGATTGCTCTTCACCCTCTTTTTCATCCAGTATTGATGATGAACTGTTACTATGGAATTCACTTGATCTTCCTACTGTTTGTTGTGTTAACTAG 1221 0.4054 MARKRKASEEVKERNLSDETMAWDEVMKEAAALGSGRKLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACVLRGANTRTNFWLSYQSSSTPALPSKITNLLLQRLKARNDTSTKPCTVSSSSSSTSLLINQQQSQQEDVRGTESTYFTLDQFSDFLNDPEDYSTNNNEFSNDSAQTDCITNSLESCLNENDDCREIEKEMVMEFDFNSVTQTSSADVNSGGEREEDSEEGTDLSAQDFQFLDNVVPSSYHYSLFEITEEIEEQLEAENCGDEPSMFREVLKRMKYERKFSASLYAFNGIPECLKLKVEPVNKNRSGVCISNELTNLKMACSKNKIEAIEKNEEHIEAMDGKEPQTSVGMDCSSPSFSSSIDDELLLWNSLDLPTVCCVN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00357 406 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 307 - -
Vian2g00357 406 MobiDBLite consensus disorder prediction 228 249 - -
Vian2g00357 406 MobiDBLite consensus disorder prediction 129 157 - -
Vian2g00357 406 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Vian2g00357 406 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vian2g00357 406 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Vian2g00357 406 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00357 Vian-Chr2 4025322 4026542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00357 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 3.97e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g00357 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00357 K09286 - gmx:100796159 590.882