Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00353 ATGGGTTGCGCGAGCTCGAGGCGGGCTCTTGCCGGAAGCGATTTCACGCCGCCGGGACTGCTATCGTTGCGATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGTAGACGCGGGAATGGAGGAGGGGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCATCTTGGCTTACCTCTGTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAATGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGCGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAATCACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATCGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTTTTAATGGGATCAACGGACTATGGTGTTTCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAACCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATAGGGAAGAAGCGAGCAGGAAAAAGACTTTAGGTAAAGGGAGAGAGGCTGTAACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGGAAATGCAGAATAGTTCTCAAAATATTGGCACAGGGGATGATGGTTGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGGAAAGTCTGAGGCTGCCCAAGTGGTGGATGGTTGCAATGGAAACAGTGTATACGCTGGACCAGCACCAGTCTCAGCATCCAGTGGTTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCAAATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGATTTTCAGCCATGTATTACCAATATACCAGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATACTCTGTTTGATCAGGACCACAGAAAATATGGTGAGCCTGTGAAGTTATCAGCGGCAAAAATGATTTCATCAAATAAAAAGGACGAGTTGTTGCAGCGGAATGATATGCGTCAATCTCTTCGTATGTCAACATCGGGAAGAGACCAATGA 2010 0.4373 MGCASSRRALAGSDFTPPGLLSLRSSSRKRCNGKRRNGVVEAREVDAGMEEGKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPSWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSNVFQAREIETGRMVALKKVRFDKLKDDSIRFMAREIAILRSLDHPNIMKLDGIITSQQSNNIYLVFEYMEHDLAGLVASPDIKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTDYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHRIFKLCGSPPEEYWKKSNLPLATMFKPQTNYEASLQERCKGFPVTAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLMPKYPPSKEMDARNREEASRKKTLGKGREAVTSKRNRRVHKVSHDHINFNKPAWKEEMQNSSQNIGTGDDGWAHVAKVKIGALHKEQPKASCDGKSEAAQVVDGCNGNSVYAGPAPVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVKGKCDLTKHEIEVSERKHGFNTRHQDRIFSHVLPIYQAPRFQQKSFDLADKYNSNYFMEFDFTDKLDTLFDQDHRKYGEPVKLSAAKMISSNKKDELLQRNDMRQSLRMSTSGRDQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00353 669 MobiDBLite consensus disorder prediction 408 432 - -
Vian2g00353 669 MobiDBLite consensus disorder prediction 647 669 - -
Vian2g00353 669 CDD STKc_CDK9_like 105 389 - -
Vian2g00353 669 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Vian2g00353 669 MobiDBLite consensus disorder prediction 405 442 - -
Vian2g00353 669 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00353 669 PANTHER CELL DIVISION PROTEIN KINASE 103 393 - -
Vian2g00353 669 Gene3D Transferase(Phosphotransferase) domain 1 188 428 - -
Vian2g00353 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vian2g00353 669 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Vian2g00353 669 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Vian2g00353 669 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00353 669 FunFam probable serine/threonine-protein kinase At1g54610 188 429 - -
Vian2g00353 669 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00353 669 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00353 Vian-Chr2 3973258 3978090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00353 97 464 Core Cell Cycle Gene Families AT5G10270 43.117 2.57e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian2g00353 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00353 - - vum:124825561 1316.98