Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00336 ATGGAGTACGGCAATTGGGCTGAATCGCTGCAAACAGAAACCCCACTCCTCTCTTTCCCCCAACCTTCCTCATCATCTTATGCTCCTCCACCATCTCAGACCACCCATTATCCCTCTTACCCTCAAAACCCTAACCCCTCTTCTTCTCTTCCCCTCAAACCTCCTGGGGTTGATTCCCTTCCGCCCTCCAACCCTATTATGTATTCGAATCATGAATCTGTTCCCATTCCCAGTTTGATCTATCCCCAGACCCATGTTGGGACTGGTTCTGATTCTGGGTACTATGTAAACCAGAACTGGGCTGCCAGAGAAGCTGTTAGGCAATTTGGTTCTGACCCAACTGTCTATGCGCCTGGTATCTCTATACCATCCAATGGCTCAGAACAATCGGCTATGTGGTGGGCAAATACTGCAGCTCAACTTCATGGCAATGGAATACTGAATAAAAAACAAAAGAAAGCTAAAACTAAGGTTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGAATGCACTGGCAAGGAAGTGCTGGACCAACATAAATTAGGAAAGAAGCACAAAAGGAACTTGGAAAAACTAAGAGAATCATTGAAATCAACCCAAGTTCAACCATCTGGGTCATCTAATCCCGTAATAGGACCCCAATTACCAGACAACAAGAGCAAATCAACCACCAGTGGGAACAAGATTAAGAGAAAAAAAGCTGAAACCCATGAAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGTGGGGCAGCAGCTGAAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTTTCATCTTACTGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATATGATCATACACAGTTCTATGCCAGTTGA 900 0.4367 MEYGNWAESLQTETPLLSFPQPSSSSYAPPPSQTTHYPSYPQNPNPSSSLPLKPPGVDSLPPSNPIMYSNHESVPIPSLIYPQTHVGTGSDSGYYVNQNWAAREAVRQFGSDPTVYAPGISIPSNGSEQSAMWWANTAAQLHGNGILNKKQKKAKTKVVQPAYCEVCKIECTGKEVLDQHKLGKKHKRNLEKLRESLKSTQVQPSGSSNPVIGPQLPDNKSKSTTSGNKIKRKKAETHEDLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNFHLTGQKHAAMLKKAYDHTQFYAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00336 299 Gene3D Classic Zinc Finger 147 193 - -
Vian2g00336 299 Gene3D Classic Zinc Finger 227 290 - -
Vian2g00336 299 MobiDBLite consensus disorder prediction 229 247 - -
Vian2g00336 299 MobiDBLite consensus disorder prediction 197 247 - -
Vian2g00336 299 Pfam Zinc-finger of C2H2 type 163 186 - -
Vian2g00336 299 Pfam Zinc-finger of C2H2 type 260 283 - -
Vian2g00336 299 SUPERFAMILY beta-beta-alpha zinc fingers 156 194 IPR036236 -
Vian2g00336 299 SUPERFAMILY beta-beta-alpha zinc fingers 257 289 IPR036236 -
Vian2g00336 299 Coils Coil 183 203 - -
Vian2g00336 299 SMART ZnF_U1_5 159 193 IPR003604 GO:0003676|GO:0008270
Vian2g00336 299 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
Vian2g00336 299 MobiDBLite consensus disorder prediction 7 43 - -
Vian2g00336 299 MobiDBLite consensus disorder prediction 197 224 - -
Vian2g00336 299 MobiDBLite consensus disorder prediction 1 68 - -
Vian2g00336 299 MobiDBLite consensus disorder prediction 44 61 - -
Vian2g00336 299 PANTHER ZINC FINGER PROTEIN 385B-LIKE 20 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00336 Vian-Chr2 3844980 3847661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00336 164 293 C2H2 Transcription Factor Family AT5G61190 32.394 1.64e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00336 - - gmx:100814580 391.734