Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00333 ATGCAACTTTCTACGGTGACATGCAAGGTGGAGAAACCATGCCAAGGTTACGGGCTTGAAACCGCCGCCTTAAGCACAGCACTGTTCAACAATGGCCTGAGCTGTGGTGCATGTTTTGAGATAAAGTGCGTGGACGACCCTCGATGGTGCATTCCGAATGCAGGTTCGATCAAAGTTACTGCAACAAATTTCTGTCCGCCGAATTACTCGCCACCGAATTTAGACCACTGGTGCAATCCTCCACAGGAACACTTCGACTTGTCGATGAAAATGTTCACCAGCATTGCCGCATACAGAGCTGGGATAATCCCAGTGAAGTATCGTAGAGTGGCATGCAGAAAAAGTGGGGGTGTGAAATTCCAAACAGCAGGGAACCCTTATTGGCTTCTGGTTTTGGTGTACAACGTTGGCAATGCCGGTGATGTTTCCGAGGTTAGCATCAAAGGATCGAATGGTGAGTGGAAATCCATGTCTAGGGTTTGGGGACAGAATTGGTTGACCGGAGAGAACTTGGTGGGGCGATCTTTGTCCTTTAAGGTGACTACCAGTGATGGAAAAGTGGTGGAGTTCGACGAGGTTGCACCTTCCGGTTGGCAATTTGGACAGAGCTACGAGGCCCACACTAATTTTTAG 633 0.4897 MQLSTVTCKVEKPCQGYGLETAALSTALFNNGLSCGACFEIKCVDDPRWCIPNAGSIKVTATNFCPPNYSPPNLDHWCNPPQEHFDLSMKMFTSIAAYRAGIIPVKYRRVACRKSGGVKFQTAGNPYWLLVLVYNVGNAGDVSEVSIKGSNGEWKSMSRVWGQNWLTGENLVGRSLSFKVTTSDGKVVEFDEVAPSGWQFGQSYEAHTNF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00333 210 PRINTS Expansin/Lol pI family signature 154 168 IPR007118 GO:0005576
Vian2g00333 210 PRINTS Expansin/Lol pI family signature 25 43 IPR007118 GO:0005576
Vian2g00333 210 PRINTS Expansin/Lol pI family signature 100 116 IPR007118 GO:0005576
Vian2g00333 210 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vian2g00333 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 127 206 IPR007117 -
Vian2g00333 210 Gene3D - 3 113 IPR036908 -
Vian2g00333 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 117 IPR007112 -
Vian2g00333 210 CDD DPBB_EXPA_N 15 112 - -
Vian2g00333 210 Pfam Expansin C-terminal domain 118 195 IPR007117 -
Vian2g00333 210 SMART dpbb_1 21 107 IPR007112 -
Vian2g00333 210 SUPERFAMILY Barwin-like endoglucanases 15 135 IPR036908 -
Vian2g00333 210 SUPERFAMILY PHL pollen allergen 114 205 IPR036749 -
Vian2g00333 210 Gene3D - 117 210 IPR036749 -
Vian2g00333 210 PRINTS Expansin signature 57 67 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 116 128 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 43 54 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 192 208 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 16 30 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 128 149 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 75 92 IPR002963 GO:0009664
Vian2g00333 210 PRINTS Expansin signature 92 105 IPR002963 GO:0009664
Vian2g00333 210 PANTHER EXPANSIN-A15 15 206 IPR002963 GO:0009664
Vian2g00333 210 Pfam Lytic transglycolase 21 107 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00333 Vian-Chr2 3797662 3799562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00333 15 210 Expansin Gene Family AT5G39280 59.694 1.27e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00333 - - gmx:100789595 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00333 2 3797662 3799562 Vian2g00333 2 3797662 3799562 ECH