Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00308 ATGAAAGTGGTCGAAGTTCTGAGCATAGCACCGAGCTCTGAATCAAAAGAGCTGCCGACAGAGGCATCTTTCGCCCTCACCTTCTTCGACATATTATGGCTAAGGTTACCCCCTGTTCAACGTGTCTTCTTCTACGAATTTCATCATCCGACTGATGTTTTTTTTGATACCCTTCTTCCCAAACTCAAACGCTCTCTCTCTCTTGCACTTGGCCACTTTTTCCCTCTTGCTGGACATCTCACTTGGCCCACTCATTCCACCAAACCCCTCATCGTTTACAACCAAGGTGATACTCTTTCATTCACTGTAGCTGAATCTGACGCCGATTTCAACCATCTTGCAGGCACAGATTTCACCGAAGCTACAGAAACTCACCCTTTTGTACCTCCCTTGAACATATCCCACGAACAAACTACGCTTTTTGCCCTGCAAGTTACTCTCTTTCCGAACGCTGGATTTGCCATTGGAATAACCTCCCACCATGCTGTTCTTGATGGCAAAGCTTCAACAACATTTGTCAAATCGTGGGCATATCTCTGCAGAGAAGCACAACCACCCTTTTCTTTGCCAGCGGAATGGACTCCTTTCTTTGATAGGGAAATAGTGAACGACCCCAAGAAAATAGGAGAAAAGTATTCCCTTGATTGGTTAAAGATGGGTGGACCCAACAACAGAAGCCTCAAGGTTAGCGAGATGCCTGTTCCAGAAGAAGCAACCAGAGGCTTGTTTCATTTGTCTAGCTCAGGTATTGAAAAGCTGAAGCAGATTGTGCAGAGTAAAGAGAATAACACGAACCTTCACTTGTCAACTTTTGTTCTAGCTGCCGCCTATTCGATGGTATGCAGAGTGAAAGCAGAAGGTGGCCAAAGTACAAGTACTGGTTTCGGTCTGAATGTTGATTGCAGGCGTCAGATGGAGCCGCCTGTTCCTCCAACGTATTTAGGGAACTGTGTTGGTATCACAGTCGCAATTACTGAAACAAAAGACTTGTTGGGGGAGGATGGACTTATCGTGGCTGTGAAAGCACTGAGTGAAGCTTTGGGAACATTGAAGAAGGAAGGTTTTCTGCATGAAGCAGAAGACTGGTGGAAGATGGTGTATGAAAGTTACAAAGTCGGTGACACAAAGACAGCTGCTTTTGCAGGGTCACCGAGGTTTGAAATTTACAGTAGTGATTTTGGTTGGGGAAAACCAACGAAGGTGGAGATGGTGTCTATTGACAGAACTGCAGCGTTTTGTTTTTCAGATAGCAGAACAGGTGACGGAATTGAAATAGGTTTCGTGACAAAGAAAAAAGCTATGGAGACCTTTGCTTCTCTCTTTGAAGATGGCCTTCAATCTTGA 1344 0.4501 MKVVEVLSIAPSSESKELPTEASFALTFFDILWLRLPPVQRVFFYEFHHPTDVFFDTLLPKLKRSLSLALGHFFPLAGHLTWPTHSTKPLIVYNQGDTLSFTVAESDADFNHLAGTDFTEATETHPFVPPLNISHEQTTLFALQVTLFPNAGFAIGITSHHAVLDGKASTTFVKSWAYLCREAQPPFSLPAEWTPFFDREIVNDPKKIGEKYSLDWLKMGGPNNRSLKVSEMPVPEEATRGLFHLSSSGIEKLKQIVQSKENNTNLHLSTFVLAAAYSMVCRVKAEGGQSTSTGFGLNVDCRRQMEPPVPPTYLGNCVGITVAITETKDLLGEDGLIVAVKALSEALGTLKKEGFLHEAEDWWKMVYESYKVGDTKTAAFAGSPRFEIYSSDFGWGKPTKVEMVSIDRTAAFCFSDSRTGDGIEIGFVTKKKAMETFASLFEDGLQS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00308 447 Gene3D - 1 227 IPR023213 -
Vian2g00308 447 Pfam Transferase family 9 442 - -
Vian2g00308 447 SUPERFAMILY CoA-dependent acyltransferases 242 447 - -
Vian2g00308 447 PANTHER - 2 446 - -
Vian2g00308 447 Gene3D - 234 447 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00308 Vian-Chr2 3358627 3359970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00308 47 442 Monolignol Biosynthesis Gene Families AT5G48930 24.471 2.23e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00308 - - gmx:100805184 623.239