Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00306 ATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAAACAATCAGTGATCCTGAAAAGGAAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGCTACTTCTAATGAAGCTGCAAACTCTCACTCTCACTCTCAGCCTAATGAACAACTTCTTAATATAAATAGCAGCATTCACTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGACAAGGCAAGTTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATGCCAAATAATCTCTTGCCAAGGGTAAACCATCCTTCATTCTTGGGTCTGCTAAATACTATGCCACATGGTTACCACTGGGAAGCTTCCGCTGGTGATGTTTCTCATCCTCAGTTGGAAAACAATGGATTTTCAAACCAAACAGACATACACGGCATTAACGTTGTACCTTTCCCAACATCAACATTGTCTTTATCAACAAGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCGGCACAGCCGTATTTCCCTTCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTCAGCTTGGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCATAAAGACCAAGATTTCCCTTCCAAGTGA 1161 0.4186 MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQTISDPEKEKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAATSNEAANSHSHSQPNEQLLNINSSIHWQGSDQNSSWKLKRKEVSGEMISTDKASWINRSEEDKQGSNNEGPSTHVMPNNLLPRVNHPSFLGLLNTMPHGYHWEASAGDVSHPQLENNGFSNQTDIHGINVVPFPTSTLSLSTRNSQILLCPPGAAQPYFPSHFTAMDMDQRQINHYQMLSSGSQNPLANSLNHSFSLAMMSHKPLHSPNSSKSPSHKDQDFPSK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00306 386 Pfam TCP family transcription factor 84 212 IPR017887 -
Vian2g00306 386 MobiDBLite consensus disorder prediction 363 378 - -
Vian2g00306 386 MobiDBLite consensus disorder prediction 211 239 - -
Vian2g00306 386 MobiDBLite consensus disorder prediction 45 68 - -
Vian2g00306 386 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Vian2g00306 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 345 IPR005333 GO:0003700
Vian2g00306 386 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00306 Vian-Chr2 3343565 3344725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00306 67 156 TCP Transcription Factor Family AT3G02150 82.222 2.80e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian2g00306 TCP 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00306 - - var:108327895 756.133