LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g00289	ATGGAAACAACTACCAAACCAATAGCTTTGGGAACCATCCTTCTCCTATTGAGTTTCTTTCATCTTTCCAAAGCAGATGTTATTTTTGATCCCCCTGACCTTCTCACCATCAACTGTGGCTCTTCCACCAACTTCTCCACGCCCGACGGTCGGAACTGGATTGGAGACACCAACACAAAGCTTCTCTCTATAAGTCGGGGCTCAGTTCTTGCTACTGCTCTCACAGAATCAACCATACTGGGTCCTTACGCCTCTGCTCGCCTCTCCTTCTCTAATTTCACTTACTCAATCTTCAATCTCACCGCTGGCCCAATGTTCCTTCGCCTCTTCTTCTTCTCAACTTCATACCACAACAACTTTAATCGCTCCAAAGCCGTTTTCTCGGTCAAAGCAGGCCCATACACTCTCCTTCAACGTTTCAATGCTTCCCTCGATGCGGATTCTGTTAATGACCCTGCTCACTCCAACATCCTATTCAGAGAGTATTGCATCAATCTCCGAGAAGGACAAAACCTCAACATAACCTTCATTCCAAGCTCCACAGGTTCCTACGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCTCTTATCTCTACTACACCGATCCTAACGTCGACATCCATGGATTGCCGAAACTTGTTGGAGGAGGAACATATCCAATTGAAACCATTTTGGCTCTGGAAACAAAGTACCGGCTAAGACTGGGGGACCGAAATATCCCCGCCGCAGAGGATACGGGTATGCTCAGAACGTGGGATGTCCATAATGAATATATAACTAATCCAGGTGTAGAATCTCTTGATATTGACAATACAGCCAAGCTGAACTTTAGTAAGACTCCTAATTACACTGCACCAGACCAGGTATACCGTTCATTAGCGAGTATGGGACAAAACGAACTTGTGAACATGGGGTTCAACCTCACATGGCAGCTTCCTGTTGATCCTGGTTTCACCTACGTGCTACGGTTACACTTTTGCCAGCTTAACCCGATGGTTATTGGGTCTGGTGACCAGATCTTCCTCATCTTCATTCAGGATCATTTGGTTGAAGACATGGTAGACATTTTCAATTGGGGCGATAAACAGAAGGGTGTACCAGTGGTTAGAGACTACGTAGTCATCATTCGAGATAATCAGAAAAAGGCAAATCTTTCTGTGAAATTACACCCTCACGATAAAAGCATGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACCCAACAGGTAACCTCGCTGAACCTAGCTCAGCCCCGCCTCCATTCCAGACCGTTCAAATATCAAAAAATAAAAACAACAGCACTACGAGAACCCCTGCCGCCGTTGCAGGTGCAGTTTCCGGTGTCGTTTTGCTCTCCCTTATCATCGTTTTCATCCTAATCAAGCGCAGGAAGAACGTCTCTTTCAGCAAGGGTCACATTAAAAAAGACAGAACTTCTCTGGGAAGTGGCTCATCATCGCTACCAACCCACCTCTGCCGTCACTTCACAATCGCAGAAATCAGAGCAGCAACCAACAACTTCGATGAGCTCTTAGTCGTCGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACATGCGTCGCAGTGAAAAGGCTCAAACAAGGTTCTCAGCAAGGTATTAACGAGTTCGTGAACGAGATCGAAATGCTTTCTCAACTACGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATACTTGTTTACGATTTCATGGGTCGTGGAACCCTCCGTGACCATCTCTACGACTCCGATAACCCGTCCCTGCCGTGGGAGCAAAGAGTAGAAATATGCATAGGTGTTGCAAGAGGATTGCATTATCTGCATACATGTGTGAAGCAGGTGATCATTCACCGTGACGTGAAGAGCACAAATATCTTGTTGGATGAAAAATGGGTGGCCAAGGTTTCAGACTTTGGTTTATCCAGAATTGGGCCTACAGGTATTTCGATGTCCCACGTGAACACTCAGGTAAAAGGTAGCATAGGATACTTAGACCCTGAGTACTACAAAAGGCAGCGTTTGACGGAGAAATCTGACGTGTACTCGTTTGGGGTAGTGCTCTTGGAGGTATTGTGTGGGAGACAACCTTTGGTTCACTGGGAGGAGAAGCAACGGATATCAGTTGTTAAATGGGCGAAGCATTGCTATGAGAAGGGATGTCTGTGTGATATTGTGGATCCCTCATTGAAGGGCCAGACAGCAGCTCAGTGTTTTCACAAATTTGGTGAGATTGCTCTGAGCTGCTTGCATGAGGATGGTACTGAAAGACCCTCCATGAAAGACGTGGTTGGGATGCTCCAGCTTGTTCTGCAACTTCACTATAGTGGTGTTGGTGAGGAGGTGTCGGACAGTGGTTTGTGTAGTCAACATGATGCAGATTATAGTAAGAGCACCACAGCAAACGACGGAGATAATAGCAGCAGGGGGAGCAAGGAATCTTCTGTGTTAATCCCTGACGATGTTTTCTCAGAGATTAAGGATCCAAAGGGACGATGA	2556	0.4632	METTTKPIALGTILLLLSFFHLSKADVIFDPPDLLTINCGSSTNFSTPDGRNWIGDTNTKLLSISRGSVLATALTESTILGPYASARLSFSNFTYSIFNLTAGPMFLRLFFFSTSYHNNFNRSKAVFSVKAGPYTLLQRFNASLDADSVNDPAHSNILFREYCINLREGQNLNITFIPSSTGSYAFINGIEIVSMPSYLYYTDPNVDIHGLPKLVGGGTYPIETILALETKYRLRLGDRNIPAAEDTGMLRTWDVHNEYITNPGVESLDIDNTAKLNFSKTPNYTAPDQVYRSLASMGQNELVNMGFNLTWQLPVDPGFTYVLRLHFCQLNPMVIGSGDQIFLIFIQDHLVEDMVDIFNWGDKQKGVPVVRDYVVIIRDNQKKANLSVKLHPHDKSMIKDAQLNAIELFKISDPTGNLAEPSSAPPPFQTVQISKNKNNSTTRTPAAVAGAVSGVVLLSLIIVFILIKRRKNVSFSKGHIKKDRTSLGSGSSSLPTHLCRHFTIAEIRAATNNFDELLVVGVGGFGNVYKGYIDDGSTCVAVKRLKQGSQQGINEFVNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMGRGTLRDHLYDSDNPSLPWEQRVEICIGVARGLHYLHTCVKQVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGISMSHVNTQVKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLCGRQPLVHWEEKQRISVVKWAKHCYEKGCLCDIVDPSLKGQTAAQCFHKFGEIALSCLHEDGTERPSMKDVVGMLQLVLQLHYSGVGEEVSDSGLCSQHDADYSKSTTANDGDNSSRGSKESSVLIPDDVFSEIKDPKGR	851

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g00289	851	Gene3D	Phosphorylase Kinase; domain 1	499	590	-	-
	Vian2g00289	851	Pfam	Malectin-like domain	37	411	IPR024788	-
	Vian2g00289	851	MobiDBLite	consensus disorder prediction	813	851	-	-
	Vian2g00289	851	FunFam	Receptor-like protein kinase FERONIA	487	590	-	-
	Vian2g00289	851	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	635	647	IPR008271	GO:0004672\|GO:0006468
	Vian2g00289	851	ProSiteProfiles	Protein kinase domain profile.	514	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian2g00289	851	FunFam	FERONIA receptor-like kinase	34	196	-	-
	Vian2g00289	851	MobiDBLite	consensus disorder prediction	813	833	-	-
	Vian2g00289	851	Gene3D	Transferase(Phosphotransferase) domain 1	591	805	-	-
	Vian2g00289	851	FunFam	Receptor-like protein kinase FERONIA	591	806	-	-
	Vian2g00289	851	Gene3D	-	34	196	-	-
	Vian2g00289	851	Gene3D	-	226	412	-	-
	Vian2g00289	851	FunFam	FERONIA receptor-like kinase	226	412	-	-
	Vian2g00289	851	CDD	STKc_IRAK	529	787	-	-
	Vian2g00289	851	SUPERFAMILY	Protein kinase-like (PK-like)	488	787	IPR011009	-
	Vian2g00289	851	ProSitePatterns	Protein kinases ATP-binding region signature.	520	543	IPR017441	GO:0005524
	Vian2g00289	851	PANTHER	OS03G0124300 PROTEIN-RELATED	13	473	IPR046957	GO:0004672
	Vian2g00289	851	SMART	serkin_6	514	788	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian2g00289	851	Pfam	Protein tyrosine and serine/threonine kinase	520	785	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g00289	Vian-Chr2	3056703	3059258	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g00289	22	851	Receptor kinase-like Gene Family	AT3G51550	44.345	0.0	667

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vian2g00289		Malectin_like	5.9e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g00289	-		-	gmx:113000103	1086.25