Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00287 ATGACTGATACCCAACAGTGTCCCAATGAAAAATTCGGAACTTCTCTTGGCAGTGACTTATCGTGGCTACCCACCCACCTCTGCCGCCACTTCTCAATCGCGGAAATCATAGCAGCAACCAACAACTTCGATGAACTCTTAGTCGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCTACGACGGTTCAACACGCGTCGCAGTGAAAAGGCTCAAACGAGGTTCTCCGCAAGGTATTAACGAGTTCGTGAACGAGATCGAAATGCTTTCTCAACTACGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATACTCGTTTACGATTTCATGGGTCGTGGAACCCTCCGTGTCCATCTCTACGACTCCGATAACCCCTCCCTTCCTTGGGAGCAAAGGGTCAAAATATGCATAGGTGTTGCAAGAGGATTGCATTATCTGCATACAGGTGTGAAGCAGTCGATCATTCACCGTGACGTGAAGAGCACCGATATCTTGTTGGATGAAAAATGGGTGGCCAAGGTTTCAGACTTAGGTTTATCCAGAATTGGACCCACAGGTCTTTCGATGTCCCATGTGAACACTCAGGTGAAAGGCAGCATAGGATACTTAGACCCGGAGTACTCGTTTGGGGTAGTGCTCTTGGAGTTATTGTGTGGGAGACAACCTTTGGTTCACTGGGAGGAGAAGCAACGGGTATCAGTTGTTAAATGGGCGAAGCATTGCTATGAGAAGGGATGTCTATGTGAAATTGTGGATCCCTCGTTGAAGGGCCAGACAGCAGCTCAGTGTTTTCATAAATTTGGTAAGATTGCTGAGCTGCTTGCATGA 858 0.4802 MTDTQQCPNEKFGTSLGSDLSWLPTHLCRHFSIAEIIAATNNFDELLVVGVGGFGNVYKGYIYDGSTRVAVKRLKRGSPQGINEFVNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMGRGTLRVHLYDSDNPSLPWEQRVKICIGVARGLHYLHTGVKQSIIHRDVKSTDILLDEKWVAKVSDLGLSRIGPTGLSMSHVNTQVKGSIGYLDPEYSFGVVLLELLCGRQPLVHWEEKQRVSVVKWAKHCYEKGCLCEIVDPSLKGQTAAQCFHKFGKIAELLA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00287 285 FunFam Receptor-like protein kinase FERONIA 16 119 - -
Vian2g00287 285 Pfam Protein tyrosine and serine/threonine kinase 49 247 IPR001245 GO:0004672|GO:0006468
Vian2g00287 285 Gene3D Phosphorylase Kinase; domain 1 28 119 - -
Vian2g00287 285 ProSiteProfiles Protein kinase domain profile. 43 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00287 285 Coils Coil 280 285 - -
Vian2g00287 285 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Vian2g00287 285 SUPERFAMILY Protein kinase-like (PK-like) 19 264 IPR011009 -
Vian2g00287 285 PANTHER OS07G0166700 PROTEIN 28 282 IPR045272 GO:0004714|GO:0006468
Vian2g00287 285 FunFam Os07g0541700 protein 122 209 - -
Vian2g00287 285 Gene3D Transferase(Phosphotransferase) domain 1 120 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00287 Vian-Chr2 3047849 3048706 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00287 15 281 Receptor kinase-like Gene Family AT3G51550 62.143 1.20e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vian2g00287 PK_Tyr_Ser-Thr 2.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00287 - - var:108327154 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00422 8 7124264 7131533 Vian2g00287 2 3047849 3048706 PCT