Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00282 ATGGCCCAGTCCTTTGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTCTCGGTGGCACTTTACCCCATTTCGGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAAGATGCCGTAGAGAGAAGTGTGTTTTCTGTTGTAAAAGGACTACTTAAAACAGATGGCGTCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCTATTCCTGCCAGAATAATTTTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCTTTCAGAATGCTTGAACCGTTTCGACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTACAGCGGGGGTTTGGATGTTGCTCGCAAGGTTTTAAGATCTGATGGCATACGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATGACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGGGTCATTTGGAGGTTCCTGGGTCATGATACCAAATATGATGAACACACTCCTAGTCTGCAGAAAATAATGTTGGTTCAGGCTATGGGAGGGATTATTGCTGGTGCATCTTCATCCTGCATAACAACCCCATTGGATACTATCAAGACACGATTACAGGTAATGGGTCATGAAAATAAAATGTCTATAAAACAAGTTGCTAAAGATTTAATCAACGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGCCCAAGATTCTTTAGCATGTCAGCGTGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTCTGCGCAAAAGATGAATAG 945 0.4402 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVATKDAVERSVFSVVKGLLKTDGVPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHDTKYDEHTPSLQKIMLVQAMGGIIAGASSSCITTPLDTIKTRLQVMGHENKMSIKQVAKDLINEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCAKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00282 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Vian2g00282 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Vian2g00282 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vian2g00282 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Vian2g00282 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vian2g00282 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Vian2g00282 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
Vian2g00282 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Vian2g00282 314 Gene3D Mitochondrial carrier domain 22 314 IPR023395 -
Vian2g00282 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Vian2g00282 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Vian2g00282 314 Pfam Mitochondrial carrier protein 227 313 IPR018108 -
Vian2g00282 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00282 Vian-Chr2 2959999 2964461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00282 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 76.547 3.31e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00282 K15121 - gmx:100782750 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00282 2 2959999 2964461 Vian2g00282 2 2959999 2964461 ECH
Vian8g00427 8 7232835 7237166 Vian2g00282 2 2959999 2964461 PCT