LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g00281	ATGGCCTTCTCTCTGCTACCAAAATTAACTCCTTGCATTTTTTTCTTGGTTCTGTTATCTTCAACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTATGTCCTGGACCCCTGATGGATATGTCGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCATATTACTTTACCTGGCTGGTATCTAAGGTGGACATGGGCAAAAAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTGTTCCACATTCTTGTATGAAAAATCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGTTGCAAAGGTGGGGTGCTTAGTTCATGGGTGCAGGATCCAAGCAGAGCAGCAGCATCTTTTCAACTTAGTGTTGGTAGAGCTGGAACCACAAACAGAACTGTTAAACTCCCAACAAACTTCACCTTGGAAGCACCTGGACCACGTTATACTTGTGGACAAGCTAAGATTGTCAGACCCACTAAATTCATTACTCCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGCAGGTGGTATGCAGATACTCACAATTTCTAACTCATAAAACTCCCACTTGCTGCCTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGTCCAACATGTTCATGTGGCTGCCGAAGTAACTCATCTCAGTCAGGGAAATGTGTAAATCCAGGTACACCACATTTGGCCTCATTTGTTTCTGGCTTCGGGAAGAACGAATTTTCACCTACGGTTCAATGTACCAATCACATGTGTCCAATCAGAGTCAACTGGCATGTTAAGCTTAACTCCGAGAAGTACTGGCATGTGAAGATTACTATTACTAATTTGAATTATAGGATGAATTATTCTGACTGGAACTTAGCCATTCAACACCCAAACTTTGACCATCGGACTCAAGTGTCCGGTTTCACCTACAAGCTAATGACTCCTTATGCTTCAATAAATGATGCAGCAATGTTGTGGGGAATGAAGTCCCAGCATAATGATGTTCTCATCCAAGCTGGCCCGAATGGGAAGGTTGAAGGAGATGTAGTCTTCCGAAAGGATAAAGCAACTTTAAGGTTTGATAAGGGATGGGCTTTCCCTCGAAGGATCTACTTCAATGGTGACACTTGTATTATGCCACCACCCAGTGCTTACCCCTTTTAG	1263	0.422	MAFSLLPKLTPCIFFLVLLSSTCFTSTDAYDPLDPNGNITIKWDVMSWTPDGYVAVVTMNNFQRYRHITLPGWYLRWTWAKKEVIWSMMGGQTTEQGDCSKFKGGVPHSCMKNPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPSRAAASFQLSVGRAGTTNRTVKLPTNFTLEAPGPRYTCGQAKIVRPTKFITPDKRRVTQALMTWQVVCRYSQFLTHKTPTCCLSLSSFHNNTIVPCPTCSCGCRSNSSQSGKCVNPGTPHLASFVSGFGKNEFSPTVQCTNHMCPIRVNWHVKLNSEKYWHVKITITNLNYRMNYSDWNLAIQHPNFDHRTQVSGFTYKLMTPYASINDAAMLWGMKSQHNDVLIQAGPNGKVEGDVVFRKDKATLRFDKGWAFPRRIYFNGDTCIMPPPSAYPF	420

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian2g00281	420	PIRSF	COBRA	2	420	IPR006918	GO:0010215\|GO:0016020
Vian2g00281	420	PANTHER	PROTEIN COBRA	17	420	IPR006918	GO:0010215\|GO:0016020
Vian2g00281	420	Pfam	COBRA-like protein	53	216	IPR006918	GO:0010215\|GO:0016020

Showing 1 to 3 of 3 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g00281	Vian-Chr2	2954035	2957151	Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g00281	4	420	COBRA Gene Family	AT3G02210	65.550	0.0	592

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g00281	-		-	gmx:100783820	729.939

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Vian2g00281	2	2954035	2957151	Vian2g00281	2	2954035	2957151	ECH
Vian8g00429	8	7255304	7257318	Vian2g00281	2	2954035	2957151	PCT
Vian2g00281	2	2954035	2957151	Vian8g00428	8	7243857	7254317	PCT

Showing 1 to 3 of 3 entries

Previous1Next