Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00281 ATGGCCTTCTCTCTGCTACCAAAATTAACTCCTTGCATTTTTTTCTTGGTTCTGTTATCTTCAACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTATGTCCTGGACCCCTGATGGATATGTCGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCATATTACTTTACCTGGCTGGTATCTAAGGTGGACATGGGCAAAAAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTGTTCCACATTCTTGTATGAAAAATCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGTTGCAAAGGTGGGGTGCTTAGTTCATGGGTGCAGGATCCAAGCAGAGCAGCAGCATCTTTTCAACTTAGTGTTGGTAGAGCTGGAACCACAAACAGAACTGTTAAACTCCCAACAAACTTCACCTTGGAAGCACCTGGACCACGTTATACTTGTGGACAAGCTAAGATTGTCAGACCCACTAAATTCATTACTCCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGCAGGTGGTATGCAGATACTCACAATTTCTAACTCATAAAACTCCCACTTGCTGCCTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGTCCAACATGTTCATGTGGCTGCCGAAGTAACTCATCTCAGTCAGGGAAATGTGTAAATCCAGGTACACCACATTTGGCCTCATTTGTTTCTGGCTTCGGGAAGAACGAATTTTCACCTACGGTTCAATGTACCAATCACATGTGTCCAATCAGAGTCAACTGGCATGTTAAGCTTAACTCCGAGAAGTACTGGCATGTGAAGATTACTATTACTAATTTGAATTATAGGATGAATTATTCTGACTGGAACTTAGCCATTCAACACCCAAACTTTGACCATCGGACTCAAGTGTCCGGTTTCACCTACAAGCTAATGACTCCTTATGCTTCAATAAATGATGCAGCAATGTTGTGGGGAATGAAGTCCCAGCATAATGATGTTCTCATCCAAGCTGGCCCGAATGGGAAGGTTGAAGGAGATGTAGTCTTCCGAAAGGATAAAGCAACTTTAAGGTTTGATAAGGGATGGGCTTTCCCTCGAAGGATCTACTTCAATGGTGACACTTGTATTATGCCACCACCCAGTGCTTACCCCTTTTAG 1263 0.422 MAFSLLPKLTPCIFFLVLLSSTCFTSTDAYDPLDPNGNITIKWDVMSWTPDGYVAVVTMNNFQRYRHITLPGWYLRWTWAKKEVIWSMMGGQTTEQGDCSKFKGGVPHSCMKNPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPSRAAASFQLSVGRAGTTNRTVKLPTNFTLEAPGPRYTCGQAKIVRPTKFITPDKRRVTQALMTWQVVCRYSQFLTHKTPTCCLSLSSFHNNTIVPCPTCSCGCRSNSSQSGKCVNPGTPHLASFVSGFGKNEFSPTVQCTNHMCPIRVNWHVKLNSEKYWHVKITITNLNYRMNYSDWNLAIQHPNFDHRTQVSGFTYKLMTPYASINDAAMLWGMKSQHNDVLIQAGPNGKVEGDVVFRKDKATLRFDKGWAFPRRIYFNGDTCIMPPPSAYPF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00281 420 PIRSF COBRA 2 420 IPR006918 GO:0010215|GO:0016020
Vian2g00281 420 PANTHER PROTEIN COBRA 17 420 IPR006918 GO:0010215|GO:0016020
Vian2g00281 420 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00281 Vian-Chr2 2954035 2957151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00281 4 420 COBRA Gene Family AT3G02210 65.550 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00281 - - gmx:100783820 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00281 2 2954035 2957151 Vian2g00281 2 2954035 2957151 ECH
Vian8g00429 8 7255304 7257318 Vian2g00281 2 2954035 2957151 PCT
Vian2g00281 2 2954035 2957151 Vian8g00428 8 7243857 7254317 PCT