Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00280 ATGGGTTTCTCTCTGTTACCAAAAGCAACTCCTTGCATATTGTTCTTGGTTCTGCTGTATTTTACTTCCTTCACTTCCACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAATTTCCAACAATATCGTCATATTGCTTCACCTGGCTGGTCACTAGGATGGACATGGGCAAAAAAGGAGGTAATATGGAGCATGATGGGATCGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTATTCCACATTGCTGTAAGAAGGATCCGACCGTTGTGGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTGCTCAGTTCTTGGGTGCAGGATCCTACCAATGCTGTTTCATCATTTCAAGTTAGTGTTGGTAGAGCTGGTACCACAAACAAAACTGTCAAAGTCCCGAAAAACTTTACCCTGCATGCACCAGGACCAGGTTATACTTGTGGTCCAGCCAAGATTGTGAGACCCACCCAATTCATTCAAGCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGAATGTGACATGCACATACTCACAATTTCTAGCTCAGAAAACTCCCTCTTGCTGTGTCTCACTTTCATCTTTCTATAATGATACTATTGTGCCGTGCCCAACATGTGCATGTGGTTGCCAGGGTAATTCATCTCAGTCAGGAAGTTGTGTGAATCCAAATACCCCACATTTGGCATCGGTTGTTTCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAGTGTACCAGTCATATGTGTCCAGTCCGAATCCACTGGCATGTTAAGCTAAACTACAAGGAGTACTGGCGTGTAAAAGTTACTATTACTAATTTTAATTACAGGATGAACTATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATTTGACTCAACTATTCAGTTTCAACTACAAGTCATTGACCCCTTACGGTACAATAAATGATACAGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCAAGCTGGCCCTAATGGCAATGTTCAATCCGAGCTACTCTTCCGAAAGGATAAAGCAACTTTTACTTTTGATAAGGGATGGGCTTTTCCTCGAAGGATCTACTTCAACGGTGACAACTGTGTCATGCCACCACCTGATGCTTATCCGTGGTTACCTAATGCTGGTTCTCGGCAAGAGGTTTCCTTGTTTGCCTTAGTGATAGCTTCTTTGGTAGCCTTGGTGTTTTATGCCCACGCATAA 1347 0.4239 MGFSLLPKATPCILFLVLLYFTSFTSTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGSQTTEQGDCSKFKGGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPTNAVSSFQVSVGRAGTTNKTVKVPKNFTLHAPGPGYTCGPAKIVRPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCACGCQGNSSQSGSCVNPNTPHLASVVSGSGKNNFSPLVQCTSHMCPVRIHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNMVVQHPNFDNLTQLFSFNYKSLTPYGTINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRQEVSLFALVIASLVALVFYAHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00280 448 PANTHER PROTEIN COBRA 17 437 IPR006918 GO:0010215|GO:0016020
Vian2g00280 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
Vian2g00280 448 PIRSF COBRA 3 448 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00280 Vian-Chr2 2943592 2946748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00280 13 443 COBRA Gene Family AT3G02210 75.520 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00280 - - gmx:100783820 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00280 2 2943592 2946748 Vian8g00429 8 7255304 7257318 PCT