Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00271 ATGGGTTGCCTGGCTACAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGAAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACTCCTTTGGAGGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGAGACAGAAGGAACAACAACAACAACCTGAGAAGTGTGATTTCAAAAGCATCACGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGATACAAGAAATTGGATTGATGAACCCAACAATAGATAACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCGGAGGATGATGGCTTATGGTTTGGTTTATGGGACTTTGATGAACCACTGATGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAAATGAAGGCATATTTTCTGTTGGAGAGGATTCCACGCAAAGTCATGTTTGTTTTGATGATATATTTGGATGA 738 0.4119 MGCLATEKGWKKGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQQPEKCDFKSITCHKDTMNGTKSFETQNSKIQEIGLMNPTIDNQYNNTVPSMHEGFSSTWPEDDGLWFGLWDFDEPLMSFADYVNQFSKCVMPNEGIFSVGEDSTQSHVCFDDIFG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00271 245 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Vian2g00271 245 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vian2g00271 245 FunFam Myb transcription factor 12 64 - -
Vian2g00271 245 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 181 - -
Vian2g00271 245 CDD SANT 69 110 IPR001005 -
Vian2g00271 245 SMART sant 64 112 IPR001005 -
Vian2g00271 245 SMART sant 11 61 IPR001005 -
Vian2g00271 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Vian2g00271 245 Gene3D - 68 139 - -
Vian2g00271 245 Gene3D - 11 64 - -
Vian2g00271 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Vian2g00271 245 MobiDBLite consensus disorder prediction 114 134 - -
Vian2g00271 245 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vian2g00271 245 CDD SANT 14 59 IPR001005 -
Vian2g00271 245 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Vian2g00271 245 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00271 Vian-Chr2 2823843 2824762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00271 9 204 MYB Transcription Factor Family AT3G30210 51.442 5.17e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g00271 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00271 K09422 - gmx:100785540 357.066