Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00266 ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTACAGAACGTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGCGCATGCGATTCCTTCATCTTTACAGGGCACAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAGTTTGGGTGGTAAATGGAACGATACCAGTGAAGATGGATCAAAGGAATATCGGAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACTTGCCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA 678 0.4189 MGSVCCCFNVDDFEDYVNPNSPVYRNCMCLSCFLQNVLTVYASIFRRGEAHAIPSSLQGTASMTSTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLSLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00266 225 MobiDBLite consensus disorder prediction 91 123 - -
Vian2g00266 225 SUPERFAMILY RING/U-box 171 222 - -
Vian2g00266 225 CDD RING-H2_AIRP1-like 172 219 - -
Vian2g00266 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Vian2g00266 225 MobiDBLite consensus disorder prediction 72 148 - -
Vian2g00266 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 223 - -
Vian2g00266 225 SMART ring_2 175 215 IPR001841 -
Vian2g00266 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Vian2g00266 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vian2g00266 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00266 Vian-Chr2 2773099 2778764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00266 1 224 C3H Transcription Factor Family AT5G15790 59.740 3.94e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00266 - - gmx:100788192 438.343