Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00261 ATGGGTTCAGTTTGTAGCTGTTTTAACGTTAATGACATTGAAGATTATTTGAATCCAAATAGTCCTGTATACAGGAACTGTATGTGTTTTGGTTGTTTCATACAGTACTTTTTGACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCGGTTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACACTTATCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCGGATCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTGAGAGATGATGGAGAAGCTGACTCAGAATCTTTAAATTTAGGTGGCAAATGGAATGATACCAGTGAAGATGGAGCAAAGGAATACCGGAAGTCCACCGTGAGACTTTCATCAGCAAAACTTACAACTGGAGATGGGGTTATCTATTCATCATCGGAAGAGGAGGAATGCTGTCCGACTTGTCTAGAAGAATACACCGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 678 0.4174 MGSVCSCFNVNDIEDYLNPNSPVYRNCMCFGCFIQYFLTVYASIFRRGEVHAVPSSIQGAASMTSTASLDNSLSDTYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRDDGEADSESLNLGGKWNDTSEDGAKEYRKSTVRLSSAKLTTGDGVIYSSSEEEECCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00261 225 CDD RING-H2_AIRP1-like 171 219 - -
Vian2g00261 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 223 - -
Vian2g00261 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vian2g00261 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vian2g00261 225 MobiDBLite consensus disorder prediction 91 127 - -
Vian2g00261 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
Vian2g00261 225 SMART ring_2 175 215 IPR001841 -
Vian2g00261 225 SUPERFAMILY RING/U-box 170 222 - -
Vian2g00261 225 MobiDBLite consensus disorder prediction 70 137 - -
Vian2g00261 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00261 Vian-Chr2 2736844 2739719 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00261 1 224 C3H Transcription Factor Family AT5G15790 58.009 6.06e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00261 - - gmx:100788192 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00261 2 2736844 2739719 Vian2g00261 2 2736844 2739719 ECH