Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00249 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGTGTCTCTATTGGAGTGGCCCTTGGGATTTTGATAGCTTGCTTGGTGTATTTTTGCACAAGGTGGTACAATAAGCGAACTCATCTTAGCCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGATTAGGAACGAGCACTGACTTCAGTGCTTCACTCACCAGTTCCATAGCCACTTATAGGTCACCAAATCCTCCAAAAAAATCACATCCAGCTGGGCGGAATCATCAGAATAAAGATGGCTTTGCTTCTGTATCAGGCATTCTGAAGTACTCGTACAAGGAAATTCAGAAGGCCACACAAAATTTCACAAGTATTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCGTGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATACGATGAAGAAAAAGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCGCACGGAATAGAATACCTTCATGAAGGGGCAGTACCACATGTCGTACATCGAGATCTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTCGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTACCTCGAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCATCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAGCGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCATCTATAAGTGAAGTTTCGCAGGCTATATTGGGGATTAGGCAAAGGCAAAGGCGTCTGATGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGCATGAGTCAAATAGATGAGCAACAGGTTGAATTAAGTACAGGGAAATAG 1251 0.4181 MVDQGDLVVICVSIGVALGILIACLVYFCTRWYNKRTHLSRSANEPSLTAIPIRTNGLGTSTDFSASLTSSIATYRSPNPPKKSHPAGRNHQNKDGFASVSGILKYSYKEIQKATQNFTSILGEGSFGTVYKAVMPTGEVVAVKMLAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYDEEKELSWDERLQIAVDISHGIEYLHEGAVPHVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYITSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCSVEEVRQLAKIAHKCLHKSPRKRPSISEVSQAILGIRQRQRRLMKEDTMSFASTNFSRSMSQIDEQQVELSTGK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00249 416 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vian2g00249 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vian2g00249 416 Gene3D Phosphorylase Kinase; domain 1 83 191 - -
Vian2g00249 416 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00249 416 FunFam serine/threonine-protein kinase PBS1-like 86 191 - -
Vian2g00249 416 SMART serkin_6 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00249 416 MobiDBLite consensus disorder prediction 75 95 - -
Vian2g00249 416 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Vian2g00249 416 CDD STKc_IRAK 122 373 - -
Vian2g00249 416 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 387 - -
Vian2g00249 416 SUPERFAMILY Protein kinase-like (PK-like) 95 373 IPR011009 -
Vian2g00249 416 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Vian2g00249 416 Gene3D Transferase(Phosphotransferase) domain 1 192 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00249 Vian-Chr2 2602870 2607801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00249 111 375 Receptor kinase-like Gene Family AT1G67720 44.765 2.05e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vian2g00249 PK_Tyr_Ser-Thr 3.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00249 - - gmx:100794239 721.079