Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00245 ATGCAGATATTCGTGAAAACCCTTACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCTGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCAGCAGCGTCTCATCTTCGCAGGAAAGCAGCTTGAGGACGGTCGCACCCTCGCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCTAAGAAGCGCAAGAAGAAGACCTATACCAATCAGAAACCCTTGGAAACCCTAGCAGCTGCAATGCAGATATTCGTGAAAACCCTTACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCAGCAACGTCTCATCTTCGCAGGAAAACAGCTCGAGGACGGTCGCACCCTCGCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCCAAGAAGCGCAAGAAGAAGACCTATACCAAACCTAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCTGTCTTGCAGTTCTATAAGGTTGACGATTCCGGAAAGGTGCAGAGGCTTCGCAAGGAGTGCCCCAACGCTGAGTGCGGTGCTGGAACCTTCATGGCTAACCATTTTGATCGCCACTACTGCGGCAAGTGCGGTCTCACTTATGTATACCAGAAGGCGGATGCCTAA 759 0.5296 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTNQKPLETLAAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00245 252 SMART Ribosomal_S27_2 199 244 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vian2g00245 252 Pfam Ubiquitin family 100 171 IPR000626 GO:0005515
Vian2g00245 252 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vian2g00245 252 Gene3D - 178 252 IPR038582 -
Vian2g00245 252 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vian2g00245 252 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vian2g00245 252 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vian2g00245 252 Gene3D - 98 177 - -
Vian2g00245 252 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vian2g00245 252 Pfam Ribosomal protein S27a 199 244 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vian2g00245 252 SUPERFAMILY Zn-binding ribosomal proteins 197 250 IPR011332 GO:0006412
Vian2g00245 252 SUPERFAMILY Ubiquitin-like 94 174 IPR029071 -
Vian2g00245 252 CDD Ubl_ubiquitin 1 76 - -
Vian2g00245 252 SUPERFAMILY Ubiquitin-like 1 92 IPR029071 -
Vian2g00245 252 SMART ubq_7 1 72 IPR000626 GO:0005515
Vian2g00245 252 SMART ubq_7 98 169 IPR000626 GO:0005515
Vian2g00245 252 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vian2g00245 252 FunFam Ubiquitin-40S ribosomal protein S27a 98 176 - -
Vian2g00245 252 ProSiteProfiles Ubiquitin domain profile. 98 173 IPR000626 GO:0005515
Vian2g00245 252 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Vian2g00245 252 ProSitePatterns Ubiquitin domain signature. 124 149 IPR019954 -
Vian2g00245 252 Gene3D - 1 94 - -
Vian2g00245 252 PANTHER UBIQUITIN 1 87 - -
Vian2g00245 252 CDD Ubl_ubiquitin 98 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00245 Vian-Chr2 2560931 2563986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00245 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 94.565 1.62e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00245 K02977 - epa:110252685 357.066