Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00239 ATGACGATTGGTAGTTTAGCACCCAAGACAGAGAAAAAGAGATCAAGTAAAAACAAGGCAGTGGTTAATGAAAATGCACCCTTGTTGCCAAAAAGTCAGGTTCAGGGGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACCTATCTACCACAATTATTGGTGCTGGAATCATGGCGTTGCCTGCAACCTTGAAACAGTTGGGGATGGTGCCTGGCCTTATTGCTATCATCATCATGGCCTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTAGGTTTACCCGAGCAGGGAAGTCTGTTTCTTATGCTGGTCTCATGGGGGATTCCTTTGGGAAGTATGGAAAAGCTCTGGTGCAGATATGTGTCATAATCAATAACATTGGCGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAGGTGGAGATCATCACTTCGGTATCCTTGAAGGATGGTTTGGTGTGCGCTGGTGGACAGGACGGACATTTGTTGTTCTTATTACAACACTCGCCATATTTGCACCCCTTGCGAGTTTTAAACGAATTGATTCATTGAGATTCACATCTGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTAGTCATTGCTGTGGGAATTGCAGTTGTCAAGATAATAAGTGGAGGCGTTGCGATGCCCAGACTCTTCCCAGTCACTACAGATGTGGCATCATTCTTTAAACTATTCACTGTAGTTCCTGTGTTTGTGACTGCCTATATCTGCCACTACAATGTTCACAGCATAGACAATGAGCTTGAGGACTCATCACAGATGCGAGGGGTTGTGCAAACTGCCCTCGTTCTATGCTCTTCTGTGTATGTAATGATAAGTTTCTTTGGTTTCCTCCTATTTGGAGAAGGAACTCTTGATGATGTGTTGGCCAATTTCGATACCAATCTTGGAATCCCTTTTGGTTCTGTGCTCAACGATGCTGTTCGATTAAGCTACGCAGCACACCTGATGCTTGTATTCCCAGTTGTTTTCTATCCATTGCGGCTCAATATAGATGGTCTCCTCTTTCCTTCATCAAGGCCTCTGGTTCTTGATAACATCAGATTTGCATCTCTGACTATTTCCCTTATTGGTGTCATCTTTCTGGGAGCAAATTTCATACCCAGCATTTGGGATGCTTTCCAATTTACCGGAGCAACTGCCGCAGTCTGTATAGGATTCATTTTTCCAGCTGCCATCACTCTTAAGGACCGCTACAACATTGCAACTAGATCAGACAAGATTTTATCTATTGTTATGATAGTTTTGGCTGTCTTCTCTAACGTGGTGGCTATATATAGTGATGCCTATGCCTTGATCAAGCAGAACCAAACTTCACGCGAATGA 1398 0.4299 MTIGSLAPKTEKKRSSKNKAVVNENAPLLPKSQVQGSDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGLIAIIIMALLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSGGDHHFGILEGWFGVRWWTGRTFVVLITTLAIFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGIAVVKIISGGVAMPRLFPVTTDVASFFKLFTVVPVFVTAYICHYNVHSIDNELEDSSQMRGVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDAVRLSYAAHLMLVFPVVFYPLRLNIDGLLFPSSRPLVLDNIRFASLTISLIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATRSDKILSIVMIVLAVFSNVVAIYSDAYALIKQNQTSRE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00239 465 MobiDBLite consensus disorder prediction 1 22 - -
Vian2g00239 465 Pfam Transmembrane amino acid transporter protein 47 451 IPR013057 -
Vian2g00239 465 PANTHER AMINO ACID TRANSPORTER 45 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00239 Vian-Chr2 2488896 2491467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00239 3 465 Amino Acid or Auxin Permease AAAP Family AT3G30390 68.898 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00239 K14207 - gmx:100796345 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00239 2 2488896 2491467 Vian2g00239 2 2488896 2491467 ECH
Vian8g00461 8 7747972 7751259 Vian2g00239 2 2488896 2491467 PCT