Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00229 ATGGAAAGAAGGAATTGGAAACCTCAACCTCAAGTGAAGTGTACTTGCATCTTCTTCCTTGGAAATTCCAGTTTAATGGGGTCTCCAAGAGGAACAACTCTTCTCTTTTTCACATTGTTCTTCTTTTGGAGCTTCGCAGATGCTTTGCTTTCTCCTAAGGGAGTGAACTTCGAAGTGCAAGCCTTAATGAGCATAAAACGCTCTCTAGAGGATCCACATGGTGTTCTAGACAATTGGGATGGGGATGCAGTCGATCCATGTAGCTGGACTATGGTCACATGTTCTTCAGATAACTTGGTCGTTGGACTGGGCACTCCAAGTCAAAGTCTATCTGGTACTCTATCTCCGAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGACCAATCCCATCAGAGTTGGGAAAACTTCCTAAGCTTCAGACCCTTGATCTCTCAAACAACTTCTTCAGAGGGGAGATTCCTCAATCTCTGGGACACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACACTCTTGTTGGTGAATGCCCAGAGTCTCTGGCTAACATGACCCAACTCAATTTTCTTGACTTGTCATACAACAATCTTAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCATTCAGCATTGTTGGAAACCCCATTGTTTGTGCAACGGGAAAAGAGCCAAACTGTCATGGGATGACACTGATGCCTATGTCCATGAACTTGAACAATACCGAACATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTATCGGTTTTGGAGGCGTTATTTGGTGGAGACACAAGCACAATCAACAAGCATTCTTCGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTCGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTCACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATTCAATTTCAGACAGAAGTTGAAATGATCAGCTTGGCAGTGCACCGAAACCTCCTCAGACTCTACGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAGGGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTACTGTACCTTCATGAGCAATGTGATCCAAAGATCATTCACAGGGATGTGAAAGCTGCAAACATATTGCTTGATGACTACTGTGAAGCTGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGACTCACACGTCACAACTGCAGTGAGAGGCACAGTGGGGCATATTGCCCCAGAGTACCTTTCCACAGGACAGTCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAGAGAGCTCTAGAGTTTGGAAAATCAGCCAACAACAAAGGAGCCATGCTTGATTGGGTAAGGAAAATTCATGTGGAGAAAAAGCTTGAAATGCTGGTAGACAAGGATCTGAAGAACAACTATGACAGAATTGAACTTGAGGAAATGGTTCAAGTGGCCCTCTTGTGTACTCAGTATCTTCCAGGGCATAGGCCTAAAATGTCTGAAGTGGTTCGCATGCTCGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCACAGAGAGTTGACACAACCAAGTTCAAACCCCAAGAGTCATCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGATGA 1947 0.4448 MERRNWKPQPQVKCTCIFFLGNSSLMGSPRGTTLLFFTLFFFWSFADALLSPKGVNFEVQALMSIKRSLEDPHGVLDNWDGDAVDPCSWTMVTCSSDNLVVGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGPIPSELGKLPKLQTLDLSNNFFRGEIPQSLGHLRSLQYLRLNNNTLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPIVCATGKEPNCHGMTLMPMSMNLNNTEHALQSGRPKTHKMAIAFGLSLGCLCLIVIGFGGVIWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQISTHNFSSKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVRKIHVEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTTKFKPQESSSSDRYSDLTDDSLLLVQAMELSGPR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00229 648 Pfam Leucine Rich repeats (2 copies) 122 161 IPR025875 -
Vian2g00229 648 SUPERFAMILY L domain-like 58 220 - -
Vian2g00229 648 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 35 608 - -
Vian2g00229 648 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
Vian2g00229 648 Gene3D Ribonuclease Inhibitor 55 237 IPR032675 -
Vian2g00229 648 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vian2g00229 648 SMART serkin_6 328 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00229 648 ProSiteProfiles Protein kinase domain profile. 328 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00229 648 FunFam Somatic embryogenesis receptor kinase 1 297 404 - -
Vian2g00229 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vian2g00229 648 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Vian2g00229 648 SUPERFAMILY Protein kinase-like (PK-like) 305 598 IPR011009 -
Vian2g00229 648 FunFam Somatic embryogenesis receptor-like kinase 1 405 617 - -
Vian2g00229 648 Gene3D Transferase(Phosphotransferase) domain 1 405 617 - -
Vian2g00229 648 FunFam Putative LRR receptor-like serine/threonine-protein kinase 55 237 - -
Vian2g00229 648 Pfam Protein kinase domain 329 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00229 Vian-Chr2 2349226 2352500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00229 39 648 Receptor kinase-like Gene Family AT5G16000 78.444 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian2g00229 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00229 - - gmx:100798412 1177.16