Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00211 ATGAAGGCTGGACTGGGACTTCCTGATAACGATGCTTGGTACATGATTGAAACAATTGCAGAAAGGAACAACATTGGATCCAAGCAATTTCATAGAACTCATGCCAATGAGTTGGATAAACTTACACCTGTTGAGGAATATGCATGCCCAATATCTTTAAGATTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAGGTTGGTTTGATGAGGGTAATACTATATGCCCAAAAACCAAAAAGAAACTGTATCATATGGCATTGACTCCAAATATTGTCTTCGAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGGTCAGCTGAACAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAATAACATTCACCATGACATTGGAACCATGTCATTCATTACCTTTTCCCTCAAATACCACACTATCACTTAA 504 0.3988 MKAGLGLPDNDAWYMIETIAERNNIGSKQFHRTHANELDKLTPVEEYACPISLRLMYDPVVIASGETYERMWIQGWFDEGNTICPKTKKKLYHMALTPNIVFEDLILKWCETNGVSIPDPRSAEQEWSYLRGGLTTIDRDYGWINNIHHDIGTMSFITFSLKYHTIT 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00211 167 PANTHER U BOX DOMAIN-CONTAINING 33 122 - -
Vian2g00211 167 CDD RING-Ubox_PUB 45 93 IPR045210 -
Vian2g00211 167 Pfam U-box domain 45 113 IPR003613 GO:0004842|GO:0016567
Vian2g00211 167 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
Vian2g00211 167 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
Vian2g00211 167 SUPERFAMILY RING/U-box 35 119 - -
Vian2g00211 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00211 Vian-Chr2 2148074 2150932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00211 43 135 U-box Gene Family AT1G27910 52.688 1.10e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00211 - - gmx:100798951 171.014