Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00201 ATGGTTGCCGCCAAGAAGACCGTGAGCTTTCTTTGCTTCTCTGCAATTAACAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAGTACACCCTTGGTTACAAGACCGTTCTCAAATCGCTCAGGAGCTCCAAAGGAAAACTGATCATCATTGCCAACAACTGCCCTCCTTTGAGGAAGTCAGAGATAGAGTACTATGCTATGTTGGCAAAGGTCGGAGTTCATCACTACAATGGGAACAACGTTGATTTGGGAACTGCATGCGGTAAATATTACAGAGTGTGCTGTCTCAGCATTATTGATCCAGGTGATTCTGATATCATCAAGACACTGCCTGGTGAACTATAA 369 0.4499 MVAAKKTVSFLCFSAINKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00201 122 SUPERFAMILY L30e-like 23 116 IPR029064 -
Vian2g00201 122 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 23 115 IPR004038 -
Vian2g00201 122 PANTHER RIBOSOMAL PROTEIN L30 1 119 IPR039109 GO:0003723
Vian2g00201 122 ProSitePatterns Ribosomal protein L30e signature 1. 34 58 IPR022991 -
Vian2g00201 122 Gene3D - 15 118 IPR029064 -
Vian2g00201 122 Hamap 50S ribosomal protein L30e [rpl30e]. 22 119 IPR000231 GO:0003723|GO:0003735|GO:0022625
Vian2g00201 122 ProSitePatterns Ribosomal protein L30e signature 2. 90 110 IPR022991 -
Vian2g00201 122 FunFam 60S ribosomal protein L30 13 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00201 Vian-Chr2 2000150 2001599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00201 1 121 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 80.165 7.72e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00201 K02908 - gmx:100806260 219.935