Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00199 ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTGCAAATCAGAACCCTCCCATCTCACAATCAACATCTTTTCCTCTCTCAAACTTTCACACCAAAGATCAACCTCAACCTTCTTCAGATAAAGGAGTGACAAAGAAGCCACACTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATCCGTGACCCTAAAAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCAAAGCTTAATTTCCCAGAAAGAGTTCATCACAATGTTTCTTTTATGCACCAACACCAACCTTCATCAAACACATCAAACACTTTTGCTGCCTCTCAATCTCTTTCTTCTGTTGATGTTTCAGCTCCACCCTCATTTTCCACACATGATCAACCTGGCCACCAACTTTTTCCAAACATCCTTCAATATGCTCAGATTCTTTCAAGTGATGATGCACAGTTTCCTTACTACACATCCCATCTTTTCAATCAACAGCAACAACAACATCATCAGCAGCAGCAGCAACAACAAGATCCTTTCAGCTCTCAATTTTCTACCACCTCTTCTCAAGCATCCTACTTCTACAACCACCAACAACAATTTGATGAACAGGGACATGATCACTCACCCCAGTAG 702 0.4231 MSAMVSALAQVMATANQNPPISQSTSFPLSNFHTKDQPQPSSDKGVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHHNVSFMHQHQPSSNTSNTFAASQSLSSVDVSAPPSFSTHDQPGHQLFPNILQYAQILSSDDAQFPYYTSHLFNQQQQQHHQQQQQQQDPFSSQFSTTSSQASYFYNHQQQFDEQGHDHSPQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00199 233 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Vian2g00199 233 PANTHER DNA-BINDING DOMAIN 26 204 IPR044808 GO:0003700|GO:0009873
Vian2g00199 233 MobiDBLite consensus disorder prediction 185 209 - -
Vian2g00199 233 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 CDD AP2 50 109 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Vian2g00199 233 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Vian2g00199 233 MobiDBLite consensus disorder prediction 18 55 - -
Vian2g00199 233 MobiDBLite consensus disorder prediction 18 44 - -
Vian2g00199 233 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00199 Vian-Chr2 1989969 1992899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00199 4 184 AP2-EREBP Transcription Factor Family AT5G13330 51.351 2.47e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g00199 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00199 - - vun:114185501 358.221