Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00197 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGCGCCGCGCCTTGCTCCGCCGCGGACGGAGGCGACGACGGAAGGCCGGCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGTGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTCGGTTTGAGCGAACCAAAATGGGCGCTGGTCTCGGCGTACTGCAAAAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGGGATGAAGGGGAGTCGTTTTGGCTCATGAGGAATGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGACAGGGAAGTGTATAATATTCTCGATTCTCCGTCCACGGCGGCTGCTGCGACTGTGGAGACTCCTACGGCCGCGGTGGAGGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGGAGTGATGATGGGTTGTTCTCTGATTGTGAGAAGGAGGAGGTTTTGCTTTCGGCCCCTTCCAAGGATGTTCCGGCACCCGTTCCAATCTCAGGTACTACCAATGAGAAACGGGCAACCCCAAATCCAGAAATGGGTTCTACATCTCAAGGAGGACGGAAGAGGAAGCGATTTTCAACCGATGCAGAAGAGGAAAGTTTGCAAAGTCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTTCGTGATCATCTTGAAGCTCAGAACACCAATTTCCAATTGGACCGCCAGCAGCAGAAAGACACTGCAACTAACATAGTTGCCGTACTTGATAAGCTGGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 915 0.5486 MALDQPSNPNAVDGAGNGAAPCSAADGGDDGRPAARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDEGESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATVETPTAAVEEEVHLYDSNRRVGSDDGLFSDCEKEEVLLSAPSKDVPAPVPISGTTNEKRATPNPEMGSTSQGGRKRKRFSTDAEEESLQSQLIDVLEKNGKMLRDHLEAQNTNFQLDRQQQKDTATNIVAVLDKLADALGRIADKL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00197 304 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Vian2g00197 304 Pfam Myb/SANT-like DNA-binding domain 39 119 IPR044822 -
Vian2g00197 304 MobiDBLite consensus disorder prediction 212 228 - -
Vian2g00197 304 CDD GT1 38 110 - -
Vian2g00197 304 MobiDBLite consensus disorder prediction 1 38 - -
Vian2g00197 304 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 304 - -
Vian2g00197 304 MobiDBLite consensus disorder prediction 199 245 - -
Vian2g00197 304 Gene3D - 40 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00197 Vian-Chr2 1965657 1969335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00197 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 8.85e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian2g00197 Myb_DNA-bind_4 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00197 - - gmx:100788594 525.783