Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00195 ATGTTTAGGAAAAGGCACATCGCTGCTTCTCTTGCCAGGGAATTGTTGGCACTCCAGCCACTTTTTATTATCTTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCAGAGCCTCCATCGCCTTCTAGGCCATCACCACCTTCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTGAGCTTGGTTTTAGGAGCAGTAACTGGACTAGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGCTGTGCGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAATTAGCTTTGGCGAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGAAGCAGCTCCCCAGAGGCTAAGAAAAAATCAGTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGTTGAATAGAGTTTGGGAGAATGAATTGGCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACCTGTGCGCCTCAGATACTGCTGCACTACAACTTGAAGCCAACAAATGTGATGCTGGATGGTGATTTTGAACCCAGATTAGCGGACTATGGTTTGGCCAAACTTCTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCTCCTGAATGTTTCCACAACTGCAGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACTGGTAAGGACCCTACAGATCCGTTCTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGAGGTTGGTTGAGGCACTTGCAGCAAGCCGGTGATGCGAGGGATGCCCTTGATAAGAGCATGTTAGGGGAAGAAGGAGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGGCCTTCTAGTGATGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1224 0.4608 MFRKRHIAASLARELLALQPLFIIFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSPPSSSGYKDDPKKIILSLVLGAVTGLVCSVFFALVVRCAVQYLNRTPILKGPVIFSPKIAPKTLQLALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSSSPEAKKKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVLNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILLHYNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGGWLRHLQQAGDARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00195 407 MobiDBLite consensus disorder prediction 40 63 - -
Vian2g00195 407 SUPERFAMILY Protein kinase-like (PK-like) 127 401 IPR011009 -
Vian2g00195 407 CDD STKc_IRAK 130 404 - -
Vian2g00195 407 Gene3D Transferase(Phosphotransferase) domain 1 208 406 - -
Vian2g00195 407 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 32 403 - -
Vian2g00195 407 ProSiteProfiles Protein kinase domain profile. 124 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00195 407 Gene3D Phosphorylase Kinase; domain 1 117 207 - -
Vian2g00195 407 Pfam Protein kinase domain 126 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00195 407 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 116 207 - -
Vian2g00195 407 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 208 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00195 Vian-Chr2 1946483 1948341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00195 34 404 Receptor kinase-like Gene Family AT2G31880 32.609 8.26e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vian2g00195 Pkinase 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00195 - - vra:106759565 776.548