Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00194 ATGTGTTCTCTTCTTTGGAGTTCCATTGTTATGTGTGTAGCACTTCAACTTCTTCAGCTTGGCATTGTGCATCCTTCACCCTCTCATATCAGGATCACTCACTTACCGGGCCAACCCCAAGTTCAGTTTCAGCAGTTTTCAGGTTATGTAAATGTTGATGACAGAAACCACCAAGCACTCTTTTTCTACTTTGCTGAAGCTGAAAAAGATGCAGCTTCCAAGCCCCTTGTTCTGTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGGGTTGGTGCGTTTTCAGAGAATGGACCATTTAGGCCCAAAGGTGAAGGCTTGGTTAGGAATCAATTCAGCTGGAACAGAGAAGCTAATATGCTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAAGTGATACTTCTGCTTATGAGGGTGTGAATGACAAAATTACAGGCAAGGATAACTTAGTGTTCTTGAAAAACTGGTTTATAAAGTTCCCAGAATACAGAAACAGAAGTTTATTCATTGTAGGAGAAAGCTATGCTGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATCTGAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACGGATTTCAATTCGAGAGCAGAGTTTTTCTGGTCGCATGGGTTAATTTCAGATACAACGTACAAAGTTTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTACAATGGTGCTGTTTCTCCTGTCTGTTCAAGTGTTATGAGCCAAGTCAGTACAGAAACAAGTAGATTTGTGGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCAGTGTTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTCACTGAGACGATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGAAAAGATGTGCAATCAGCTTTGCATGCACGTCTTGTTGGAGTTCAAAGATGGTCTGCTTGCAGCAATGTCCTGGATTATGAGCTGCGTGACTTGGAAATACCAACAATCACTGTTGTGGGGAATCTAGTACTGGAGGGAATACCAGTACTGGTTTACAGTGGTGATCAGGATTCAGTAATCCCTCTGACTGGAAGTAGAACATTAGTACATAAATTGGCAAAAATGCTAGGATTGAAAACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCCACCATCAGGGGAGCATCACATGAGGCTCCATTTTCACAGCCGGAGAGGTCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGACGACCAATGCCACAAGAGTTTTGA 1386 0.4235 MCSLLWSSIVMCVALQLLQLGIVHPSPSHIRITHLPGQPQVQFQQFSGYVNVDDRNHQALFFYFAEAEKDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLVRNQFSWNREANMLYLETPIGVGFSYSSDTSAYEGVNDKITGKDNLVFLKNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDTTYKVFTSVCNYSRYVREYYNGAVSPVCSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELRDLEIPTITVVGNLVLEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKMLGLKTTVPYRVWFEKQQVGGWTQVYGDILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPMPQEF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00194 461 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Vian2g00194 461 Gene3D alpha/beta hydrolase 28 288 IPR029058 -
Vian2g00194 461 SUPERFAMILY alpha/beta-Hydrolases 32 458 IPR029058 -
Vian2g00194 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Vian2g00194 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Vian2g00194 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Vian2g00194 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Vian2g00194 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 441 IPR001563 GO:0004185|GO:0006508
Vian2g00194 461 FunFam Carboxypeptidase 25 458 - -
Vian2g00194 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Vian2g00194 461 Gene3D - 356 454 - -
Vian2g00194 461 FunFam Carboxypeptidase 355 454 - -
Vian2g00194 461 Gene3D - 309 345 - -
Vian2g00194 461 Pfam Serine carboxypeptidase 36 454 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00194 Vian-Chr2 1942182 1945254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00194 317 457 Calmodulin-binding Proteins AT2G22960 26.950 1.71e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00194 K16297 - gmx:100805130 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00194 2 1942182 1945254 Vian2g00194 2 1942182 1945254 ECH