Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00186 ATGGCAGACAGTGTTGTTGGCTTCCTGGTGCAGAGGTTGTCACAACTACTTGAAAGTGAAATAAAGCTCCTTTCTGGTGTGGAAGAGAAAATAAAGTCCTTGAGTAATGAATTGAAGTTCATGAATAAATTCATCAAGAGCTCAGAGGGGAAGTACAAAGATGCAGTGGTGAAAGAAGTGGTGACGCAAATAAGAGATGTCGCCCACCAAGCAGAAGATGTGGTGGACACTTACATTCTCAACATCGCCAAACACAAACGTAGAAACAAACTGTGTCGGTTATTCCACCTCAAAGAAAAACTCGTTGTGCCCCATGAAGTCGATGCTGAGATAGAGAAGATCAGGAGTCGTATCGTTGATATTTATGAAAACCAGAAGAGGTATGGCATCAAAGAAGGTGAATTCCAAAGCAAAGAAGCAGTTGCAACAGAATGGTGCCGCAAAAGGAGGATGGATGTTGAGGAAGAAGATGTGGTAGGCTTAGTGAATGAGACCAACATTGTCATCCAACAACTCCAAAAAGATGATGTGTGTCTTAATGTTGCTTCTATAGTCGGAATGGGAGGATTGGGTAAAACCACTCTTGCCCGTAAGATCTATAACAAGGACAATGTGAAGAGGATATTTCCTTGTCGTGCATGGGGTAACGTGTCTAACGATTACAGGCCCAAGGAGCTTTTCCAAAGTCTCCTAAGGAGCTTAAATCTTTCTGGATTTGAAAATTTAAGCGAGGAGGGTCTGAAGGAGGAGGTAGCCAAAGGGTTGAAGGAGAAGAAATATTTGATAGTGCTTGATGACATATGGGAAACACGGGTATGGGATGATATAAAAGGAGCCTTTCCAGATGACAACAAAGGTAGCAGAGTATTGATCACAAGTCGTGAAATGTCTGTTGCACGCTATGCAGGAACCCCTTCTCCATACCAACTTCCTTTCCTCACCCAAGATCAAAGTTGGGAACTATTTTGTAAGAAGGTGTTTCGAGGTGAAGAATGCCCCTCCGAGTTAGAGCCTTTGGGTAGATCCATTGTCAAAGCAACTTGTGGGGGTTTACCACTTGCCGTTGTGATCTTAGGTGGACTCTTTGCAAAGAAGGAGAAGTCACAAAGAGAGTGGTCGAGAATGAAGAAGATGAGTTGGAATTCTACTGCGGACAAGAGTGAAGTGATGGATATACTAAGGCTCAGTTACGACAACTTGCCTCCAACATTAAAACCCTGTTTTCTATATTTTGGAATCTATCCTGAAGACCACGAGATCAGTGCAAGAGAAGTGATCCGATTGTGGGGAGCAGAAGGGTTCTTACAATCACAAGAAAACGCAGAACCCGAAGAAGTAGGTGATTTTTACTTGGACGAGCTGGTGGATCGAAGCTTAGTGCAAGTGACTCGTAGGAGGACTGATGGGGGTGTTAAGATATGTCAGGTTCATGATGTTCTTCGTGATTTCTGTATATCAGAGAGAAAATCTTGCAAGTTTATGGATGTTTGCAGAGAGTCCAATATTGACACCTGGAGTGATACCAATCCCCGTAGATTGTCCTTGCAGTGGCAAAGGGATTCTAATATTTCTGCTATGTCATTTGACAAATCAATGCCAAGCACTCGTTCTGTGTTCATTTTTACTTGGAGGCTTCATTATGTGAATGATTTGGTGAAAAGGTTGATGTTAGCTAGGGTTATTCATGGTTTTGATTCACCATTGGATCCCTACCATTTGAAGAGGATGATTCATTTAAGATACTTGAAAATAATAGTCGCAAGTCTTCCAGCTTGTGTATGCAACCTATGGAATTTAGAAACACTAGATGTAAACTACGAATACACAGCGTCCAGTAAAATTTGGAAGCTGAAACGATTGAGACGTCTTTACTTGAGAAGGGGAGAGTGTCCAGTCTTGCCTGAAGGAACTAGAATGGAGAATCTCCAAAGCCTTTGGTTGTGCGGTCGGAGTTCAGCAATTAAGTCCCTGATCAACAATGGCACGTTTCCTAGGTTGGTAAAATTAGTTTTGTCACCTTTTTCTGAGGGTGGTAATGAAGTAGACCTTTTATCAAGTGTACACCGCCTAAATCATCTTGGTAGTCTAAAAATAAATAAGATTCCAAAACTTTCATCAGACAAGAATGTGCTTCCATCAAAACTTACCAAGATAACCTTTAGAAACTTTTTGAATTGGTCTTTCATGAAGACACTAGGTCAGCTTCCTAACCTTCAAATTTTGAAACTAGAAAAAACCAATATTTGGAAACGAGAAAATTTCTATGGATTTGGTGCAGTAGTAAATAGGCAATTTTATGAAGACATAATGCCGGAAGATGAACCGCATAATCTTGATATTGGCAAGGGAGAGTTTAATGAACTTCAAGTGTTTCATTTGAAGGGCGTAGGGGTAAAGTCATGGAGATTAGAGGAAGGCGCAATGCCCCGTCTTCGGCATCTGCTCATTATAAAATGTCCTATTTTGTTTGAACTTCCCCAGCAGCTTTGGTCATTGGAAACCTTGCAACTTGTGCATATTGAGGGACCCTCCCAACAATTGGCTGGCAGCCTCCAAATTGTGGAGGTCAAGTACAATTGTAAAATCAAATTGGAAAATGAGAACTTACTTAGCTCAGAGGAGGAGTATTGA 2631 0.4139 MADSVVGFLVQRLSQLLESEIKLLSGVEEKIKSLSNELKFMNKFIKSSEGKYKDAVVKEVVTQIRDVAHQAEDVVDTYILNIAKHKRRNKLCRLFHLKEKLVVPHEVDAEIEKIRSRIVDIYENQKRYGIKEGEFQSKEAVATEWCRKRRMDVEEEDVVGLVNETNIVIQQLQKDDVCLNVASIVGMGGLGKTTLARKIYNKDNVKRIFPCRAWGNVSNDYRPKELFQSLLRSLNLSGFENLSEEGLKEEVAKGLKEKKYLIVLDDIWETRVWDDIKGAFPDDNKGSRVLITSREMSVARYAGTPSPYQLPFLTQDQSWELFCKKVFRGEECPSELEPLGRSIVKATCGGLPLAVVILGGLFAKKEKSQREWSRMKKMSWNSTADKSEVMDILRLSYDNLPPTLKPCFLYFGIYPEDHEISAREVIRLWGAEGFLQSQENAEPEEVGDFYLDELVDRSLVQVTRRRTDGGVKICQVHDVLRDFCISERKSCKFMDVCRESNIDTWSDTNPRRLSLQWQRDSNISAMSFDKSMPSTRSVFIFTWRLHYVNDLVKRLMLARVIHGFDSPLDPYHLKRMIHLRYLKIIVASLPACVCNLWNLETLDVNYEYTASSKIWKLKRLRRLYLRRGECPVLPEGTRMENLQSLWLCGRSSAIKSLINNGTFPRLVKLVLSPFSEGGNEVDLLSSVHRLNHLGSLKINKIPKLSSDKNVLPSKLTKITFRNFLNWSFMKTLGQLPNLQILKLEKTNIWKRENFYGFGAVVNRQFYEDIMPEDEPHNLDIGKGEFNELQVFHLKGVGVKSWRLEEGAMPRLRHLLIIKCPILFELPQQLWSLETLQLVHIEGPSQQLAGSLQIVEVKYNCKIKLENENLLSSEEEY 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00186 876 CDD RX-CC_like 2 121 IPR038005 -
Vian2g00186 876 PRINTS Disease resistance protein signature 181 196 - -
Vian2g00186 876 PRINTS Disease resistance protein signature 254 268 - -
Vian2g00186 876 PRINTS Disease resistance protein signature 348 362 - -
Vian2g00186 876 PRINTS Disease resistance protein signature 733 749 - -
Vian2g00186 876 FunFam Probable disease resistance protein At1g61300 142 306 - -
Vian2g00186 876 Gene3D - 403 487 IPR036388 -
Vian2g00186 876 Coils Coil 17 37 - -
Vian2g00186 876 Gene3D - 312 401 IPR042197 -
Vian2g00186 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 411 IPR027417 -
Vian2g00186 876 Gene3D - 143 305 IPR027417 -
Vian2g00186 876 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vian2g00186 876 Gene3D Ribonuclease Inhibitor 568 753 IPR032675 -
Vian2g00186 876 PANTHER DISEASE RESISTANCE PROTEIN RP 32 822 IPR044974 GO:0006952
Vian2g00186 876 Pfam NB-ARC domain 166 399 IPR002182 GO:0043531
Vian2g00186 876 Gene3D - 5 108 - -
Vian2g00186 876 FunFam Probable disease resistance protein At1g63360 397 486 - -
Vian2g00186 876 SUPERFAMILY L domain-like 468 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00186 Vian-Chr2 1805216 1807846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00186 159 482 WRKY Transcription Factor Family AT5G45050 22.189 4.45e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00186 - - gmx:100787796 939.873