Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00173 ATGGCTACAACTACGACTAGATCTTTTCTCCAAGTCGCGGCGACGGAGGAGGCTGCGCCGCCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATTCTTAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGGCAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGTTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTGGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAATACTGTTGGATGGTACCAATCTACATTGCTCGGCTCCTTTCAGACTGTGGAACTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGTTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTGGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGGGAGAAATTGAGGGAGAAGAATTTATCATGGGTGGATATATTTGAGGAAATACCGATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTCATGACTGAGCTGGAACCTGATACTCCTGTCACCCAGTGTGATTATGACCGTCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATACGGAGTTTTTGATAGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTACTATAGGAGTTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTCCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAGCCCTTGCCGGAAGAAGATCCTTCAAGTCCCGTTTTCAAGCCCCTCCCCGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGTAATCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGGCTGTATTTGATGAAGGCTTTGCATGAAGATTGA 1014 0.4408 MATTTTRSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSSPVFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00173 337 Gene3D Cytidine Deaminase, domain 2 2 213 - -
Vian2g00173 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian2g00173 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Vian2g00173 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vian2g00173 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vian2g00173 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 17 321 - -
Vian2g00173 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian2g00173 337 FunFam Eukaryotic translation initiation factor 3 subunit H 4 213 - -
Vian2g00173 337 MobiDBLite consensus disorder prediction 269 294 - -
Vian2g00173 337 Pfam C-terminal region of eIF3h 144 336 IPR045810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00173 Vian-Chr2 1666543 1671153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00173 88 337 Eukaryotic Initiation Factors Gene Family AT1G10840 83.600 4.45e-157 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00173 K03247 - gmx:100795273 642.114