Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00172 ATGGATTTTTCTTCTACTTCGATCTCTCACTTCAGAGTCTCTGCGAATTCGTTCCTCTCTCAATACGAACCGCTTGCTCTGCTTATCGTTCCACTGCTTTGTCTCCTTCTCGCTCACTCGCTTCACTCCTTCTCACGCCTCCTATCCGAGAACGGACTCAAAGCCACCCTCCTAGGGTTTATAATGAACGCCGTCAAATTGGTTCCTGGCGTGAAGGGATACATAGATGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAATCTGATAGCAAATCTAAAAGAGAAGGGTGGAATACTGAGTTGCCAAGCGCAGGATTAGGGACGTCTGTCCTTGATAAAATGAGAGAGGAAAAAAATAATGATCCGGTCTGGCAAGGCAAATGCTCCGGTACAGTGTATGTTAGTAATTTTGGTAAAATGTTAAATTCTGAGCAATTTGTTCTTGGGATGCCCTGCTACATTGGAGGGAGTGAATCCGATGGACATTTCTCTGTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAAGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAATAGTTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATACTATTAGCTGTGAAAACATCTCGTGACTATATGAAATCTAAAAAAGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTGACAAGAATTTTCAAGCGGATGTGAAAGCGATTCGACGTCATATTAACAAAAATACCATCCTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCGTCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGATCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTTGATTTCTCTGTTAAAGGAGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCACAGCTGGAAGCAGGCCTGGAAGTCTAATTGCGGGTGCGTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGCTCAATAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAACCCTGACATGACAATCGTGGCTTTTGGTTCAGATGTTGTGGATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATATGTGTTACACTACAACATGTGCCAATTGTTGAAGACTTTCTGAATGATTTGAAGGAATCTGTGAAAACTATATTCTCTCCGGGACACCAGCAGCAGAGGGTGGTTGCAGAGAACAGGATGACAGTTGATTTAACAGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1746 0.4273 MDFSSTSISHFRVSANSFLSQYEPLALLIVPLLCLLLAHSLHSFSRLLSENGLKATLLGFIMNAVKLVPGVKGYIDAEKQKVVDKLQSDSKSKREGWNTELPSAGLGTSVLDKMREEKNNDPVWQGKCSGTVYVSNFGKMLNSEQFVLGMPCYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKENSSGGQICGNMTSGGTESILLAVKTSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRVPVDKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGRLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTTAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSIRIQKGIEEIAELFIVGNPDMTIVAFGSDVVDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTIFSPGHQQQRVVAENRMTVDLTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00172 581 Gene3D - 159 423 IPR015421 GO:0003824
Vian2g00172 581 Gene3D Aspartate Aminotransferase, domain 1 424 526 IPR015422 GO:0003824
Vian2g00172 581 FunFam Sphingosine-1-phosphate lyase 1 543 580 - -
Vian2g00172 581 FunFam sphingosine-1-phosphate lyase 1 159 423 - -
Vian2g00172 581 PANTHER - 38 581 - -
Vian2g00172 581 Gene3D - 527 578 - -
Vian2g00172 581 SUPERFAMILY PLP-dependent transferases 150 520 IPR015424 -
Vian2g00172 581 FunFam Sphingosine-1-phosphate lyase 1 410 522 - -
Vian2g00172 581 Pfam Pyridoxal-dependent decarboxylase conserved domain 187 464 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00172 Vian-Chr2 1642834 1649161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00172 175 517 Calmodulin-binding Proteins AT5G17330 25.833 3.40e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00172 K01634 - gmx:100794395 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00172 2 1642834 1649161 Vian2g00172 2 1642834 1649161 ECH