Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00159 ATGGCTTCTTCACTCCCTCGGAGAAGAACTCACGCTCCCAAATCATCTTCTGTCCTAATCGACGACGTTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTTTTCTGCCTCCGCCCCGTCCTCCCTTCCGTCCCCAAAGGCTCCTGGTTCTGTGGCTCATGCTCCAACCACAAGCCTAAGTCTTTCCCCCTTGTACAGACCAAAATAATCGATTTCTTTCGAATTCAACGTTCTCCTGAGACATCGTTGAATCAAGATGCGCGGAAGAAGCGAAAGCGAGGTGGGAGCTTGGTGATGTCGAAGAAGAAACGGAAACTGTTGCCTTTCGTGCCGAGTGAGGATTCAAATAGGAGGTTGGAGCAGATGGCATCACTGGCGACGGCATTGACGACAACTAATACAGAGTTCAGTAATAAGCTTACTTACATGCCTGGAATGGCACCCAGGTCTGCCAATTGCCCTGCTCTCGAACGTGGTGGAATGCAGGTATTGTCAAAGGAAGATACCGAGACATTAAATTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTCATGGTTGTTTTTGATCCTTTAGAAGGTTTCACAGTTGAAGCAGATAGACCCATCAAAGATTTAACCATAATTACAGAATATGTTGGAGATGTAGATTTTTTAAAGAACAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCAAAGACACTTGTGATCTGTCCAGACAAACGTAGCAATATAGCTCGTTTCATTAATGGCATCAATAACCATACACCGGAAGGAAAAAAGAAACAAAACTTGAAGTGCGTGAGATTTGATGTTGGAGGCGAATGTCGAGTTCTTTTAGTCTCCAATAGAGATATCTCAAAGGGGGAAAGGTTGTACTATGACTACAATGGAGATGAACATGAGTATCCAACTGACCATTTTGTCTGA 1005 0.4507 MASSLPRRRTHAPKSSSVLIDDVFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPVLPSVPKGSWFCGSCSNHKPKSFPLVQTKIIDFFRIQRSPETSLNQDARKKRKRGGSLVMSKKKRKLLPFVPSEDSNRRLEQMASLATALTTTNTEFSNKLTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLVSNRDISKGERLYYDYNGDEHEYPTDHFV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00159 334 CDD PHD_RSF1 25 69 - -
Vian2g00159 334 SMART PHD_3 24 70 IPR001965 -
Vian2g00159 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 85 IPR013083 -
Vian2g00159 334 Pfam PHD-finger 24 71 IPR019787 -
Vian2g00159 334 SUPERFAMILY FYVE/PHD zinc finger 15 76 IPR011011 -
Vian2g00159 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Vian2g00159 334 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 98 332 - -
Vian2g00159 334 CDD SET_ATXR5_6-like 197 334 - -
Vian2g00159 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Vian2g00159 334 Gene3D SET domain 106 334 IPR046341 -
Vian2g00159 334 SUPERFAMILY SET domain 191 325 IPR046341 -
Vian2g00159 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Vian2g00159 334 FunFam Histone-lysine N-methyltransferase ATXR5 105 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00159 Vian-Chr2 1534455 1536461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00159 22 85 C2H2 Transcription Factor Family AT3G01460 32.836 2.16e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian2g00159 PHD 3.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00159 K24406 - gmx:100791762 621.698