Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00154 ATGGTGGGGAACGACGACGCGGGTCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCTTCCCGTACCGCCGCCGGGAACGCCTCTTCCGGCGAGGCGGGTAAGGGTTTCGCGGATTCTGGCAGCGCAGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTCACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGCCGCCGCTGCAGCCGCTGTCTATCGCTCGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCGGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATTTACAGGATTGCTCCACACTCCCCGTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCGTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGGCCAATTGTGATGATTAAGGAAGGCGAGGAACCGGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCTTTGATGGACAAATCTGGCAATAGAGTAGAAGATGGAAACTTAACTAGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACAGGAGGATTTGTGCCTCCCTTTGCGTCATCGGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCCACCCCTAGGTTATCCTTTCCCAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCTAAGTTTTTGTCTGAAGTATCCCCAGATTCTTCCTCTGTGGTTTTTACTCCTATCCCCGTATCTTCTTCTTTGTCTAGTTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTCTGTCAAAATCTTTGAAGTTGCCACTGAAGAATGATAAGAAACAAGTAATGGATGAGCCACCTACCTTTCATAACAGTCAAGAATATGACATTATTGTTAATGGCAATGTTAGCTATTTGCAACAATCAGACAGTAAAGATTATTTTTGTGAGTCTAACAAGCATGCCAAGGAGGGAGTGCTGAATTCATTTCAAAAGTGTGAGCTAGCACTATCTCCAAGCATTGTTGACCGCACGCACCTCAAGGAATCATCACTTGTTCGAAACTCTGTTGAGCCTTTGATAGATAGTTCCTCAGTAGAAGACGCAGTGCTTGGTCAGTCTGCAGCATTGAAGGGAGCCAATGAGAGTGGCTTGGCGCAGTTTAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTTTAGAAAAGGTTGAGACATTTGGTACAGATCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCACTTACACGCAGGGAACATGCTATATATTTGGGTAGGGAAGTCTTTCAATTGTGACGCTTCACAGGTTCACTTGGATGTTGATATACAGTTAGATTGTTTAGGAGCTGTTGACTGGAATCAAATTGGATGTGATCTCCTTGATCGGTTTAGTTTGCCGAAGAGTACAGCCATCAAGATTGTTAAGGAGAATGAGGAACCTTCAGAGTTCCTTGCTTTGCTCAGTTTTCAGGCTCTAATTGATCTTCCCTGTGAAAAGAGATCCAGTGAGGAGGTTGCCCCCATGCCAAGTGAATTGTAG 2643 0.4624 MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGEAGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGNLTSKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSSSVVFTPIPVSSSLSSFSNLSISSNSTSKAVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDEPPTFHNSQEYDIIVNGNVSYLQQSDSKDYFCESNKHAKEGVLNSFQKCELALSPSIVDRTHLKESSLVRNSVEPLIDSSSVEDAVLGQSAALKGANESGLAQFNVAQTSVYHWPSLEKVETFGTDHLDSKAAFVIFSPSMHLHAGNMLYIWVGKSFNCDASQVHLDVDIQLDCLGAVDWNQIGCDLLDRFSLPKSTAIKIVKENEEPSEFLALLSFQALIDLPCEKRSSEEVAPMPSEL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00154 880 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
Vian2g00154 880 SUPERFAMILY Actin depolymerizing proteins 760 856 - -
Vian2g00154 880 SUPERFAMILY Actin depolymerizing proteins 306 411 - -
Vian2g00154 880 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Vian2g00154 880 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Vian2g00154 880 Gene3D Protein tyrosine phosphatase superfamily 133 299 IPR029021 -
Vian2g00154 880 MobiDBLite consensus disorder prediction 94 122 - -
Vian2g00154 880 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Vian2g00154 880 MobiDBLite consensus disorder prediction 21 78 - -
Vian2g00154 880 MobiDBLite consensus disorder prediction 510 537 - -
Vian2g00154 880 Gene3D Severin 320 404 IPR029006 -
Vian2g00154 880 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Vian2g00154 880 PANTHER MKPA PROTEIN 12 855 - -
Vian2g00154 880 CDD DSP 158 292 - -
Vian2g00154 880 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00154 Vian-Chr2 1473407 1477072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00154 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 62.500 6.15e-66 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00154 - - vum:124838930 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00154 2 1473407 1477072 Vian2g00154 2 1473407 1477072 ECH