Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00150 ATGATGATATCAAGAGGATTGTTCGGATGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTTTCGGAGGTCTCGGAGCCGCCGGAGTCTCCGTCGCCGTACCTGGACCCCGGCGCCGAGACCTCTGCCTCACAGCAGGTGGAGTTGGAGGAGGAAATGGAGGAGCCGGAGGAGATCGAACCGCCGCCCGGGGCGGTTCCGTTTTCGCAGCTCTTCGCATGTGCCGATCGCTTCGATTGGTTCCTCATGACCGTCGGCTCCCTAGCCGCCGCGGCTCATGGCACCGCGCTCGTCGTTTACTTGCACTATTTCGCGAAGATCATCCACGTGCTGCGGATGGATCCTGAGCTCGGCACGTCACACGAGCAGTTTAACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCGTGTTGGATCTTGACGGGAGAACGACAGACTGCTGTCATCAGGTCAAATTATGTTCAAGTACTGCTTAATCAAGATATGAGTTTTTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGTTGCTTATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCCACATTCTTCAGTGGTCTTGTCATTGGCCTTACAAATTGTTGGCAGATTGCTTTGTTAACGTTAGGAACGGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTAGCAGAGAACATCCAAGATGCATATGCTGAAGCAGCTGGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCTAAGTATTCATATGCAACATCATTGCAAGCTACTCTTAGATATGGTATATTAATTAGTCTTGTTCAAGGTCTTGGTCTTGGATTTACATATGGTCTAGCAATATGTTCTTGTGCGTTACAACTTTGGGTTGGAAGATTCTTGATTATTCATGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCGGCTACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGATTGTTTGAGATGATAAGTCGATCACCCTCATCTGTTAATCATGATGGCACTGCCCCGGATTCAGTGCAAGGAAATATTGAATTTCGGAATGTTTATTTCAGCTATCTGTCCCGTCCTGAAATCCCTATCTTGAGTGGATTTTACTTCACTGTGCCTGCTAAGAAAGCCGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGCCAAATAGGATTGGTCACCCAGGAGCCTGCTTTACTCAGTTTGAGTATAAGAGACAATATTGCTTATGGTAGGGATGCTTCCATGGATCAAATTGAAGAGGCGGCTAAAATAGCTCAAGCACATACGTTTATCAGCTCATTAGATAACTGTTATGACACACAGGTTGGCAGGGCAGGTCTGGCTCTGACCGAAGAGCAAAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGACGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGGGGCTCTGAATTTGCTTATGTTGGGACGCTCTACAATAATAATTGCTCGCAGGCTTAGTCTCATAAGGAATGCTGACTACATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGGATGGCTTATATGCCGAGCTTCTTCGATGTGAAGAGGCAACCAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCGGGCTTCCAAATTGAAAACGATTCTTCAAGTCATAGCTTAAAAGAACCATCATCCCCTAAAATGACGAAGTCACCCTCTCTTCAAAGAATGTCTAATGTATCTCGACCTTCAGATGGCGCCTTTAACTTGCACGAATCACCAAAAGCCTGGAGCCCATCACCTGAGCACATGGTGGAAAATGGACAGCTATTGGATGCAGCTGATAAGGAGCCATCAATAAGAAGGCAGGACAGTTTTGAAATGAGACTTCCCCAGCTACCAAAGATTGATGTTCAGACTCTGCAGAGACAAAAGTCAAATGAATCTGATCCTGAATCTCCAGTTTCACCTCTTTTAACATCTGATCCTAAAAGCGAACGCTCCCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTAAATTGAGAGAAACAAAGGGTGTGCGACACCAAAAGCCTCCATCACTGCGGAAGCTGGCTGAGCTTAGTTTTACTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCAATCTTTGGCTCTTTCAACCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACCCATCACCTGGAACGGGAAGTAGACAAGTGGTGCTTGATCATTGCTTGCATGGGTATTGTGACGGTAGTTGCCAACTTTTTACAGCATTTCTACTTCGGTATTATGGGTGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTGGGATGGTTTGATGGTGAGGAGAACAGTACTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTTATTGGGGCTTTGCTGCACTGGCGATTAGCACTAGTGGCTTTTGCAACCCTTCCAGTTCTCTGTGTTTCTGCTATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGAGGTATCCAGGAAATGCACAGAAAGGCATCTTTGGTCCTCGAAGATGCAGTTAGGAACATTTACACCGTGGTTGCTTTCTGTGCTGGTAACAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTACATGGGATGGCAATTGGTTTTGCATTTGGTTTTTCACAATTTCTACTTTTTGCTTGTAATGCCCTGCTACTTTGGTACACTGCCATATGTATAAAGCGAGGTTACATGGATCCACCGACTGCACTCAAAGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTAAAACGACGAAAATCCCTCATATCAGTGTTTGAAATTATAGACCGTGTTCCTAAAATTGATCCTGATGATGGCTCAGCATTGAAGCCACCCAACGTATATGGAAGCATTGAGTTAAAAAGTGTTGATTTTTGCTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGATCAGGAAAGAGCACTATAATATCTTTGCTTGAGAGATTTTATGATCCAGTTGCAGGTCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTTTCAACAACCATAAGGGAAAACATTTTATACGCAAGGCATAATGCCACTGAAGCAGAGATGAAAGAGGCTGCAAGAATAGCAAATGCCCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTAGGGATGATGAGAGGCGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCCAGTTCATCAATAGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACTACCATTTTAATAGCACACAGGGCAGCAATGATGAGGCATGTAGACAATATTGTAGTGCTTAATGGCGGACGGATAGTGGAGGAAGGCAGTCATGATTCATTGGTTGCAAAGAACGGTTTGTATGTCCGCTTGATGCAACCTCATTTTGGTAAGACCTTGCGTCAGCATCGACTTGTTTAG 4212 0.4366 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVELEEEMEEPEEIEPPPGAVPFSQLFACADRFDWFLMTVGSLAAAAHGTALVVYLHYFAKIIHVLRMDPELGTSHEQFNRFTELALTIVYIAVGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLTNCWQIALLTLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYFTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDASMDQIEEAAKIAQAHTFISSLDNCYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQGALNLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETAGFQIENDSSSHSLKEPSSPKMTKSPSLQRMSNVSRPSDGAFNLHESPKAWSPSPEHMVENGQLLDAADKEPSIRRQDSFEMRLPQLPKIDVQTLQRQKSNESDPESPVSPLLTSDPKSERSHSQTFSRPHSHSDDVSVKLRETKGVRHQKPPSLRKLAELSFTEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHLEREVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDGEENSTDNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPVLCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDGSALKPPNVYGSIELKSVDFCYPSRPEVLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLLERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENILYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKTLRQHRLV 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00150 1403 FunFam ABC transporter B family member 20 1143 1393 - -
Vian2g00150 1403 MobiDBLite consensus disorder prediction 751 781 - -
Vian2g00150 1403 Pfam ABC transporter transmembrane region 835 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g00150 1403 Pfam ABC transporter transmembrane region 85 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g00150 1403 FunFam ABC transporter B family member 20 397 644 - -
Vian2g00150 1403 MobiDBLite consensus disorder prediction 662 700 - -
Vian2g00150 1403 FunFam ABC transporter B family member 20 70 409 - -
Vian2g00150 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Vian2g00150 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1153 1391 IPR003439 GO:0005524
Vian2g00150 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g00150 1403 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
Vian2g00150 1403 FunFam ABC transporter B family member 6 1000 1150 - -
Vian2g00150 1403 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1136 - -
Vian2g00150 1403 MobiDBLite consensus disorder prediction 782 806 - -
Vian2g00150 1403 Pfam ABC transporter 1171 1320 IPR003439 GO:0005524
Vian2g00150 1403 MobiDBLite consensus disorder prediction 13 61 - -
Vian2g00150 1403 Gene3D ABC transporter type 1, transmembrane domain 769 994 IPR036640 GO:0005524|GO:0016020
Vian2g00150 1403 Gene3D ABC transporter type 1, transmembrane domain 1005 1150 IPR036640 GO:0005524|GO:0016020
Vian2g00150 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g00150 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Vian2g00150 1403 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Vian2g00150 1403 SMART AAA_5 434 619 IPR003593 GO:0016887
Vian2g00150 1403 SMART AAA_5 1180 1368 IPR003593 GO:0016887
Vian2g00150 1403 MobiDBLite consensus disorder prediction 662 717 - -
Vian2g00150 1403 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Vian2g00150 1403 Gene3D - 397 644 IPR027417 -
Vian2g00150 1403 SUPERFAMILY ABC transporter transmembrane region 812 1138 IPR036640 GO:0005524|GO:0016020
Vian2g00150 1403 Gene3D ABC transporter type 1, transmembrane domain 70 652 IPR036640 GO:0005524|GO:0016020
Vian2g00150 1403 MobiDBLite consensus disorder prediction 740 806 - -
Vian2g00150 1403 Gene3D - 1151 1391 IPR027417 -
Vian2g00150 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1390 IPR027417 -
Vian2g00150 1403 PANTHER ABC TRANSPORTER B FAMILY 48 643 IPR039421 -
Vian2g00150 1403 FunFam ABC transporter B family member 6 770 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00150 Vian-Chr2 1440767 1454402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00150 53 699 Calmodulin-binding Proteins AT2G36910 42.857 5.15e-163 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00150 K05658 - gmx:100789116 2544.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00150 2 1440767 1454402 Vian2g00150 2 1440767 1454402 ECH