Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00149 ATGGCAATGTATAGAATTGCAATTGGGTCCCCTGCAGAGGCTGCCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTTTTCTCCATGATCATTTTTGTTTTTGTTGGAGAAGGATCTGGCATGGCTTACACAGGCAAGCTTACCGACAATGGACCTGCAACACCTACTGGTCTAATACTTGCATCACTGTCTCATGCATTTGGACTTTTTGTGGCTGTTTCTGTTGGGGCAGTTCATTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTTATAGGAGGAAACATAACCCTGCTGAGAAGTATTCTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCATGCATTCTTCTGAAATCTGCAACTGGTGGAATGGAAACATCAGGCTTTTCTCTATCCCCTGGTGTGTCTGTGTGGAATGCATTGATTTTTGAAGTTGTGATGACTTTTGGTTTGGTATACACAGTTTATGCAACAGCAATGGATCCAAAGAAAGGGAATGTGGGAATTGTTGCCCCTATTGCAATTGGTTTGATTGTGGGTGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACCTGGCAATGGACTCATCACTGGGTCTATTGGGCTGGACCATTCATTGGTGCAGCTATTGCTGCAATTATCTATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTTTCAAGCAATGACTTCTAG 762 0.4383 MAMYRIAIGSPAEAAQPDAIRAAFAEFFSMIIFVFVGEGSGMAYTGKLTDNGPATPTGLILASLSHAFGLFVAVSVGAVHSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVWNALIFEVVMTFGLVYTVYATAMDPKKGNVGIVAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVTWQWTHHWVYWAGPFIGAAIAAIIYDNIFIGDDGHEPLSSNDF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00149 253 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Vian2g00149 253 FunFam Probable aquaporin TIP1-1 4 252 - -
Vian2g00149 253 Pfam Major intrinsic protein 15 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 Gene3D Glycerol uptake facilitator protein. 4 253 IPR023271 -
Vian2g00149 253 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Vian2g00149 253 SUPERFAMILY Aquaporin-like 15 241 IPR023271 -
Vian2g00149 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00149 253 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00149 Vian-Chr2 1436788 1438237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00149 1 253 Major Intrinsic Protein MIP AT4G01470 81.818 5.93e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00149 K09873 - gmx:100788583 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00149 2 1436788 1438237 Vian2g00149 2 1436788 1438237 ECH