Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00147 ATGGCGGATTCGATTGTCGTGTTTCTGATAGATAAATTGACGAGGTTGTTGGTGGAGGAAGCCAAACTTCTCACCGGCGTGCGCGACCAAGTGGCGTCGTTGCAGAGCGAGCTCAAGTTCATGAATCTCTTCCTCAGGAACTCCCAAGGGAAGCGCAAAGAGCATGACATGGTCGCGGAACTCGTCAGCCAGATCAGAGACGTCGCGCACGAGGCCGAAGACGTCATCGACACCTACGTCGCCTGCATCATCAAGCAAAGCCGGAGAAACGTGATCGGGAAAGTCGGTTTCCGCGGTGTGGACCACGCGCTCATGCTTCACCAGGTGGCAGTGAAGGTCGACGGGATCAAGGCCAGAATCAAAGAGATCTTCGACAACAAAGAGAGGTACGGCATCGAGGACGGAAAGAGAGGCAGCGAAGAGGAAGCGGAGCGGATTCGGAGGCAGAGGAGGGAGGTGGAGGAGGAAGAGGTGGTAGGGTTTGCGCTGGACTCCAAGGTTGTGATTGAGAAACTCATGGTGTCGGATTCTCGTCTTAAAGTTGTTTCCGTCGTCGGTATGGGTGGTTTGGGAAAAACCACGCTTGCTCGAAAGGTATATAACTCTAACCGAGTGAAGAACGTGTTTCCTTGTCGGGCGTGGGGTTATGTGTCTAATGATTATCGACCAAGGGAGTTTTTCTTGAGCCTGCTCAAGTGTTTGATGTCCACGTCCAAGTACAGTAATTTGTTCAAGAAAAGAGAAGAGACTAGTGTGAGTGATGAAGAGCTGAAGATGAAGGTGCGAGAATGCTTGAACAGAAGCAAGTACTTGGTGGTGGTGGACGATGTTTGGCAGAAACAGGTGTGGAATGAGGTTAAAGGGGCATTTCCTGATGATCAAAATGGAAGCAGGATATTGATGACTACTCGTTCGGCTGAGGTGGCTTCTCACGCTGGTCCTGTTCCTCCCTACGCTCTTCCTTTCCTCACCAAAGAAGAAAGCTGGGAGCTGCTTTCCAAGAAGGTGTTTAGGGGAGAAGATTGTCCTTCTGATTTAGAATCCCTGGGAAAATTGATCGCTGATAGCTGTGATGGGTTGCCACTTGCTCTTATTGTGATGGCAGGGATTTTGGCTAACAAGAAGTCACCGAGGGATTGGTCTAGAATCAAGGACCATGTGAATTGGCATCTTGGGAGGGACAACACACTCAAGGACATACTCAAACTCAGCTATGACTCCTTGCCCGCGAGGTTAAAGCCTTGCTTTCTGTATTTTGGCATGTACCCTGAAGATTATAGGATCCCCGTGAAGCAGTTAATCCAGTTGTGGATATCCGAAGGATTATTAACACAAGAAACTTCTGGAGGCCAAGACATACCAGAGCCGGAATACATTGCGGAAGAGTACTTGGATGAACTGGTGGATCGAAGCTTGATCCAAGTGGTAAGTAGAACCAATGATGGGGGTGTCAAAACATGTCGGATTCACGATCTTCTTCGTGACCTTTGCATATCTGAGAGCAGGGAAGACAAGTTTTTCGAGGTTTGTGGAGAGATTGATATTCAAAACCTCAATAGTTGTCCCCGTAAGTTGTCTCTCCAGGGTACTCTTTTTCATTTCTCTTCGAGTATCGTATCTGATTACACCATCTCGGCGACGCGTTCCTTGTTATGCTTTGGGCAAGAGGTGTACAAGGTTAAGGCAAATCACTGGAGATGGCTTCTCAAGAGCTTCAGGTTGGCTCGCGTGTTGGATTTAGGACGAATGAATGTTAACTCAATACCCACTGATTTGGAGAAGCTCATTCATTTAAGGTACTTGAGAATACACTCTCATAATCTTGAAACTATTCCACCTTCTATATGCAGATTGTGGAATCTAGAAACCTTGGATTTAAGAGGTTCGCCTATAAAATCCTTTTCTGGTGAATTATGGCAACTTAAACAACTAAGGCATCTTCTGTTGTTTGGACCCGTTGGGCTCCCAGAAATGCCCTCAGAAAGTAAAACTATGCCCAATCTTCAAACCCTCTCAACCGTGGCTCTTGATCCTCGCACAGCATCGTTGTTGGATAGTCGTAGATTCCCAGGGATGACAAAATTGGGTATACATTACGAAAGACGTGACAAGTGCAATGCTAAAATACAGTTACAGAGTCTCCATCGCCTGAGCCATCTCCGGAAGCTGAAAGTGATAGGCACTACTGAGATTCCTCAAAATGCAAATGTGTTTCCGTCGAACATCACCAAGATATCCCTCACAAAGTTTGGTTTCTTCAACTCCACTGTCATGCATACGCTAGGAAAGGTTCCCAACCTTCAAGTTCTGAAATTGTCATCGCAGACGAATGATACTAGATTTGACCTGCATTGTGCCACGGGAGGGTTCCTTCAGCTTCAAGTGTTTGAGATGATTGCAATCAAGGTCAAAATGTGGAGAGTAGACAGAGGTTCAATGCCACGTGTTCGTCGTTTGGTCGTCAGAAGCTGCAAATCCTTGACTCAGCTTCCAAAAGAAGTGTGGTCTTTGAATACCTTGCGGGAAGTGCAGGTCTTGTGGCCCTGTACAGAATTAGCAAAAGGACTCCAAAATTTGGTGATGAACAATGCTTGTAAGCTCGTCGTCTATCCTCTCTCAGCAAATGATGAATTAGATTTTCTCTAA 2646 0.4671 MADSIVVFLIDKLTRLLVEEAKLLTGVRDQVASLQSELKFMNLFLRNSQGKRKEHDMVAELVSQIRDVAHEAEDVIDTYVACIIKQSRRNVIGKVGFRGVDHALMLHQVAVKVDGIKARIKEIFDNKERYGIEDGKRGSEEEAERIRRQRREVEEEEVVGFALDSKVVIEKLMVSDSRLKVVSVVGMGGLGKTTLARKVYNSNRVKNVFPCRAWGYVSNDYRPREFFLSLLKCLMSTSKYSNLFKKREETSVSDEELKMKVRECLNRSKYLVVVDDVWQKQVWNEVKGAFPDDQNGSRILMTTRSAEVASHAGPVPPYALPFLTKEESWELLSKKVFRGEDCPSDLESLGKLIADSCDGLPLALIVMAGILANKKSPRDWSRIKDHVNWHLGRDNTLKDILKLSYDSLPARLKPCFLYFGMYPEDYRIPVKQLIQLWISEGLLTQETSGGQDIPEPEYIAEEYLDELVDRSLIQVVSRTNDGGVKTCRIHDLLRDLCISESREDKFFEVCGEIDIQNLNSCPRKLSLQGTLFHFSSSIVSDYTISATRSLLCFGQEVYKVKANHWRWLLKSFRLARVLDLGRMNVNSIPTDLEKLIHLRYLRIHSHNLETIPPSICRLWNLETLDLRGSPIKSFSGELWQLKQLRHLLLFGPVGLPEMPSESKTMPNLQTLSTVALDPRTASLLDSRRFPGMTKLGIHYERRDKCNAKIQLQSLHRLSHLRKLKVIGTTEIPQNANVFPSNITKISLTKFGFFNSTVMHTLGKVPNLQVLKLSSQTNDTRFDLHCATGGFLQLQVFEMIAIKVKMWRVDRGSMPRVRRLVVRSCKSLTQLPKEVWSLNTLREVQVLWPCTELAKGLQNLVMNNACKLVVYPLSANDELDFL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00147 881 Gene3D - 139 314 IPR027417 -
Vian2g00147 881 FunFam Probable disease resistance protein At1g63360 405 499 - -
Vian2g00147 881 FunFam Probable disease resistance protein At1g61300 140 315 - -
Vian2g00147 881 Gene3D - 322 409 IPR042197 -
Vian2g00147 881 PRINTS Disease resistance protein signature 616 632 - -
Vian2g00147 881 PRINTS Disease resistance protein signature 264 278 - -
Vian2g00147 881 PRINTS Disease resistance protein signature 181 196 - -
Vian2g00147 881 PRINTS Disease resistance protein signature 357 371 - -
Vian2g00147 881 Gene3D - 6 119 - -
Vian2g00147 881 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vian2g00147 881 Coils Coil 136 159 - -
Vian2g00147 881 Gene3D Ribonuclease Inhibitor 561 866 IPR032675 -
Vian2g00147 881 SUPERFAMILY L domain-like 480 846 - -
Vian2g00147 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 419 IPR027417 -
Vian2g00147 881 Pfam NB-ARC domain 168 406 IPR002182 GO:0043531
Vian2g00147 881 CDD RX-CC_like 2 125 IPR038005 -
Vian2g00147 881 Gene3D - 410 499 IPR036388 -
Vian2g00147 881 PANTHER DISEASE RESISTANCE PROTEIN RP 33 806 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00147 Vian-Chr2 1427764 1430409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00147 179 422 WRKY Transcription Factor Family AT5G45050 24.303 1.61e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00147 - - gmx:100780593 1064.68