Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00136 ATGGTCTCCGGCATTGACATGTCACTCGACGACATTATGAGGTACTCCGCCAAGGCGGCGGCGTCTCGCCGGCTATACACATTTGTTCGCAACCCGGTCAGAACGACGCCGTATCCCGTTCCGCTGGCAAGGTATCACGGAATGATTCCAGAAATGGATTTTGAAGATGACGGTGCCGCTATGATCGAAAGCGGAACCAAACTCTTGATATCTAACTTGGATCTTGGAGTTTCAAACGGTGATATAAAGCTGCTGTTTTCGGAAGAGGGTGAATTGAAAAGATGCTCCATTCATTATGATCAGAACGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTTATGAGACACTCTGATGCTTTATCAGCCATCAATAAATACAACAATATGAGGCTTGATGGTAAACCATTGCAAATTGAGCTAGTTGGAACTAGTAGTCCTGTTGTTTCCTCTCTTCGTCAAAATAGCTTACTGGGAAGACCAAATGATTCACTTCTAAGCAAAGGAGAAAGAGTTGGAGGTAGGGGGTTCTACAACGACTTTGTACAGGAGTACATTCCAAGGGTCCGTGGAGAAGAGAATGGATATATTCGAGAGTTATATTTAACAGATATGGATGATGCTTTGGAGAGGCCTCACCGCGTTCCGAGATACCACGCAAAAGTAAAGAGCAGTAATAGAAAAGTAACTGCTAAAGATCTTGATGATGATTTGGAGAGGTATCACCTAGAGGCTAAGCGGATAAAAGAACAAAATGGAAAGTCAGATAATCATTGA 774 0.4354 MVSGIDMSLDDIMRYSAKAAASRRLYTFVRNPVRTTPYPVPLARYHGMIPEMDFEDDGAAMIESGTKLLISNLDLGVSNGDIKLLFSEEGELKRCSIHYDQNGRSKGTAEVVFMRHSDALSAINKYNNMRLDGKPLQIELVGTSSPVVSSLRQNSLLGRPNDSLLSKGERVGGRGFYNDFVQEYIPRVRGEENGYIRELYLTDMDDALERPHRVPRYHAKVKSSNRKVTAKDLDDDLERYHLEAKRIKEQNGKSDNH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00136 257 CDD RRM_THOC4 66 140 - -
Vian2g00136 257 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 60 244 - -
Vian2g00136 257 SUPERFAMILY RNA-binding domain, RBD 62 147 IPR035979 GO:0003676
Vian2g00136 257 Coils Coil 230 250 - -
Vian2g00136 257 Gene3D - 53 184 IPR012677 -
Vian2g00136 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
Vian2g00136 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Vian2g00136 257 SMART rrm1_1 67 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00136 Vian-Chr2 1334486 1336334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00136 65 141 Eukaryotic Initiation Factors Gene Family AT2G23350 35.065 1.09e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00136 K12881 - gmx:100785926 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00136 2 1334486 1336334 Vian2g00136 2 1334486 1336334 ECH