Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00123 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCCACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATTGGAGGTGGTGGTTGCGGTGGTGGCGGCTACCAGGGCTCAATTAGGCCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTGAAATGTCCGCGATGTGAATCTGCTAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTTTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTGAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAGAGAAACAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCAACACAAACTCAATTTCCATTCTTGACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGTAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCGCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGGTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACATGTTGTGA 1095 0.474 MVFPSLPIYLDPPNWSQQQPNQPAGIATQNPHIPPPLQPPPSSVTAAIGGGGCGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGTITTTPLVGRNSSDVEFQIGTGSASSLGNSGGAMLSNGLGEQWRLNNLQQVQQQFAFLSTNLEPQIGLFQFGGGENNNAEPPSYAKEGGRFNIRSKIDSISSLSGLMPQVNTIKMEENQGLNLPKNLLMGNDALWNGSGNAWSEVPCFTPSNNHML 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00123 364 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Vian2g00123 364 MobiDBLite consensus disorder prediction 12 50 - -
Vian2g00123 364 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 245 IPR045174 GO:0003700|GO:0006355
Vian2g00123 364 MobiDBLite consensus disorder prediction 127 171 - -
Vian2g00123 364 Pfam Dof domain, zinc finger 81 137 IPR003851 GO:0003677|GO:0006355
Vian2g00123 364 MobiDBLite consensus disorder prediction 12 28 - -
Vian2g00123 364 MobiDBLite consensus disorder prediction 145 171 - -
Vian2g00123 364 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00123 Vian-Chr2 1216639 1217949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00123 1 258 C2C2-Dof Transcription Factor Family AT2G37590 41.199 2.84e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g00123 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00123 - - vun:114185583 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00123 2 1216639 1217949 Vian2g00123 2 1216639 1217949 ECH